View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2578_low_3 (Length: 377)
Name: NF2578_low_3
Description: NF2578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2578_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 13 - 348
Target Start/End: Complemental strand, 27509187 - 27508853
Alignment:
| Q |
13 |
aatctctcgttcgtgctaaatttcagtaactgttcagacatataatgatgaatgatgaaaaacactagccatgtttttccataaactaggttcttttgtc |
112 |
Q |
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| T |
27509187 |
aatctctcgttcgtgctaaatttcagtaactgttcag-cacataatgatgaatgatgaaaaacactagccatgtttttccataaaataggttcttttgtc |
27509089 |
T |
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| Q |
113 |
tttattcggtctctctttacatacaaccatagctactaattttcaaattaatgtacattaatgaccttgatcatcttcgtcatcttttacctaattatag |
212 |
Q |
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| T |
27509088 |
tttattcggtctctctttacatacaaccatagctactaattttcaaattaatgtacattaatgaccttgatcatcttcgtcatcttttacctaattatag |
27508989 |
T |
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| Q |
213 |
cacaagactttaaaatgccataaaataaactgaacaaaattatttaattaattaaccaaatgatgaagaacttacaacattaagaaccctaactagctag |
312 |
Q |
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| T |
27508988 |
cacaagactttaaaatgccataaaataaactgaacaaaattatttaattaattaaccaaatgatgaagaacttacaacattaagaaccctaactagctag |
27508889 |
T |
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| Q |
313 |
ctagcttgatcttgtccattaatttaccacactaca |
348 |
Q |
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||||||||||||||||||||||||| ||| |||||| |
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| T |
27508888 |
ctagcttgatcttgtccattaattttccatactaca |
27508853 |
T |
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