View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2579_high_5 (Length: 329)
Name: NF2579_high_5
Description: NF2579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2579_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 28 - 325
Target Start/End: Original strand, 48053497 - 48053795
Alignment:
| Q |
28 |
cagaaataccaaacgagaaaggacccctaacnnnnnnnnn-gccgagataggattaggaatcattaaagagagagagttgggctagcaagctaaatgaat |
126 |
Q |
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| T |
48053497 |
cagaaataccaaacgagaaaggacccctaacaaaaaaaaaagccgagataggattagatatcattaaagagagagagttgggctagcaagctaaatgaat |
48053596 |
T |
|
| Q |
127 |
gctacattatacataacattataggatcgtgcataagtggttagcaatctctaagcttgcaagttgtggtttcgtaaagttgagtcaagtccaacttaaa |
226 |
Q |
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| T |
48053597 |
gctacattatacataacattataggatcgtgcataagtggttagcaatctctaaccttgcaagttgtggttttgtaaagttgagtcaagtccaacttaaa |
48053696 |
T |
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| Q |
227 |
ttttatcatagaatgcaaaatgtaacttactttagttgtcaaatgcaaaatgtaggacttcccacttatgaaatatcagaacaatatcctttgtttctt |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48053697 |
ttttatcatagaatgcaaaatgtaacttactttagttgtcaaatgcaaaatgtaggacttcccacttatgaaatatcagaacaatatcctttgtatctt |
48053795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 258
Target Start/End: Original strand, 48047825 - 48047931
Alignment:
| Q |
160 |
taagtggttagcaatctctaagcttgcaagttgtggtttcgtaaagttgagtc--------aagtccaacttaaattttatcatagaatgcaaaatgtaa |
251 |
Q |
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|||||||| | |||||||||| || ||||||||||||| |||||||||||| ||| |||||||||||||| |||||||||||||||||| |
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| T |
48047825 |
taagtggtgaccaatctctaacattccaagttgtggttttgtaaagttgagtacttgagttaagctcaacttaaattttaagatagaatgcaaaatgtaa |
48047924 |
T |
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| Q |
252 |
cttactt |
258 |
Q |
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| T |
48047925 |
cttactt |
48047931 |
T |
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