View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2579_low_1 (Length: 626)
Name: NF2579_low_1
Description: NF2579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2579_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 73 - 604
Target Start/End: Original strand, 52511836 - 52512387
Alignment:
| Q |
73 |
catgagtagtatacataccttctaagaatttggaagtaggcgtccattatacatcttatcaagcagtttctttgcgtcaggcctcctgagaagaccttta |
172 |
Q |
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| T |
52511836 |
catgagtagtatacataccttctaagaattgggaagtaggcgtccattatacatcttatcaagcagtttctttgcgtcaggcctcctgagaagaccttta |
52511935 |
T |
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| Q |
173 |
ttgtttggcacaccagttcctaaacaaacagggcagacaagctttcctcgacctacggaaaatctgtcaatttagtcgtttactaagnnnnnnnngaaat |
272 |
Q |
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| T |
52511936 |
ttgtttggcacaccagttcctaaacaaacagggcagacaagctttcctcgacctacggaaaatcagtcaatttagtcgtttactaag-aaaaaaagaaat |
52512034 |
T |
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| Q |
273 |
gagcaaagtagaagaatgaatgataccataacaattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccattttcct |
372 |
Q |
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| T |
52512035 |
gagcaaattagaagaatgaatgataccataacaattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccattttcct |
52512134 |
T |
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| Q |
373 |
gtaccaccacacatatcacct----------aaatgaaaagtagtattataataaggaagaagaatattattat-----------taaaaaagaatgagg |
451 |
Q |
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| T |
52512135 |
gtaccaccacacatatcacctaaatgaaatgaaatgaaaagtagtattataataaggaagaatattattattattattattattataacaaagaatgaag |
52512234 |
T |
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| Q |
452 |
agaaaagagaagagggctcacaaatgatgttaccacttccaccacaatttctgcaaccaggaggcttatcaagagcggttgctgctgagttggttgcatt |
551 |
Q |
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| T |
52512235 |
agaaaagagaagaggactcacaaatgatgttaccacttccaccacaatttctgcaaccaggaggcttatcaagagcggttgctgctgagttggttgcatt |
52512334 |
T |
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| Q |
552 |
aattaaaaatggagttgaacacaaacatttaagacattgacgcctcgaaacaa |
604 |
Q |
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| T |
52512335 |
aattaaaaatggagttgaacacaaacatttaagacattgacgcctcgaaacaa |
52512387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 52511732 - 52511795
Alignment:
| Q |
3 |
gaaggactgaaaaggatgtagtacagtgaatataa---cagcagcagcaacagaagattaacat |
63 |
Q |
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| T |
52511732 |
gaaggactgaaaaggatgtagtacagtgaatataacagcagcagcagcaacagaagattaacat |
52511795 |
T |
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