View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2579_low_13 (Length: 322)
Name: NF2579_low_13
Description: NF2579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2579_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 48106252 - 48106045
Alignment:
| Q |
18 |
gaatcgaatctgttgttaaaaggtataaaggagaattgattgcatgggatgtggtgaatgaaaatgtccattttcacttttatgaggacaaactaggtaa |
117 |
Q |
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| T |
48106252 |
gaatcgaatctgttgttaaaaggtataaaggagaattgattgcatgggatgtggtgaatgaaaatgtccattttcacttttatgaggacaaactaggtga |
48106153 |
T |
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| Q |
118 |
aaatgcatctgaattatactatttaaaagctcatgagcttgatccagaaacaacattgtttatgaatgagtataatactattgaatatagtggagataaa |
217 |
Q |
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| T |
48106152 |
aaatgcatctgaattatactatttaaaagctcatgagcttgatccagaaacaaaattgtttatgaatgagtataatactattgaatatagtggagataaa |
48106053 |
T |
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| Q |
218 |
gttgttag |
225 |
Q |
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|||||||| |
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| T |
48106052 |
gttgttag |
48106045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 216
Target Start/End: Complemental strand, 48062598 - 48062419
Alignment:
| Q |
37 |
aaggtataaaggagaattgattgcatgggatgtggtgaatgaaaatgtccattttcacttttatgaggacaaactaggtaaaaatgcatctgaattatac |
136 |
Q |
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| T |
48062598 |
aaggtataaaggacaattgattgcatgggacgtggtaaatgagaatgtccacttccacttttttgaggacaacctcggcaaaaatgcctctgcagtatac |
48062499 |
T |
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| Q |
137 |
tatttaaaagctcatgagcttgat-ccagaaacaacattgtttatgaatgagtataatactattgaatatagtggagataa |
216 |
Q |
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| T |
48062498 |
tattcagcagcttaccatcttgatcccacaacgaaca-tgttcatgaatgagtataacactatcgaatacagtggtgataa |
48062419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 214
Target Start/End: Complemental strand, 48099632 - 48099455
Alignment:
| Q |
37 |
aaggtataaaggagaattgattgcatgggatgtggtgaatgaaaatgtccattttcacttttatgaggacaaactaggtaaaaatgcatctgaattatac |
136 |
Q |
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|||||||| |||| || ||||||||||||| || |||||||| |||||||| | ||||||| |||| ||||||| || ||||||| || | |||| |
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| T |
48099632 |
aaggtatagaggacaactgattgcatgggacgttgtgaatgagaatgtccactaccacttttttgagaacaaactcggcgaaaatgcctcgccaatatat |
48099533 |
T |
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| Q |
137 |
tatttaaaagctcatgagcttgatccagaaacaacattgtttatgaatgagtataatactattgaatatagtggagat |
214 |
Q |
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| T |
48099532 |
tattcaacagcttaccatcttgatccagaaatcaaaatgttcatgaatgagtttaacaccattgaatcaagtggagat |
48099455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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