View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2579_low_14 (Length: 303)

Name: NF2579_low_14
Description: NF2579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2579_low_14
NF2579_low_14
[»] chr4 (6 HSPs)
chr4 (1-218)||(8163474-8163689)
chr4 (1-150)||(7316323-7316469)
chr4 (1-150)||(7219578-7219724)
chr4 (160-219)||(21477957-21478016)
chr4 (158-210)||(10724106-10724158)
chr4 (158-210)||(10937875-10937927)
[»] chr3 (5 HSPs)
chr3 (158-210)||(20748422-20748474)
chr3 (160-210)||(19633736-19633786)
chr3 (159-210)||(18035156-18035207)
chr3 (158-203)||(1919502-1919547)
chr3 (158-202)||(17702254-17702298)
[»] scaffold0103 (1 HSPs)
scaffold0103 (160-203)||(25941-25984)
[»] chr6 (5 HSPs)
chr6 (159-206)||(17855042-17855089)
chr6 (160-206)||(9281973-9282019)
chr6 (160-210)||(14258759-14258809)
chr6 (160-210)||(20558151-20558201)
chr6 (158-210)||(17864672-17864724)
[»] chr1 (1 HSPs)
chr1 (160-210)||(13165246-13165296)
[»] scaffold0338 (1 HSPs)
scaffold0338 (174-210)||(16474-16510)
[»] chr8 (3 HSPs)
chr8 (174-210)||(22472645-22472681)
chr8 (174-210)||(22480973-22481009)
chr8 (158-210)||(23541672-23541724)
[»] chr2 (1 HSPs)
chr2 (160-203)||(12910338-12910381)
[»] scaffold0226 (2 HSPs)
scaffold0226 (160-210)||(18385-18435)
scaffold0226 (160-210)||(27779-27829)
[»] scaffold0037 (1 HSPs)
scaffold0037 (158-203)||(110525-110570)
[»] chr7 (1 HSPs)
chr7 (163-203)||(644985-645025)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 8163474 - 8163689
Alignment:
Q  1 tactcactcaattccggagcaggaccagagttttctcctgaattcggccacacaatgtcgcgacaattgcgatgcacaacaatagtatttgatggaaatt 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  8163474 tactcactcaattccggagcaggaccagagttttttcctgaattcagccacacaatgtcgcgacaattgagatgcacaacaatagtgtttgatggaaatt 8163573  T
Q  101 ggtgaatccaacattactagcaacattttttcagacttgtccaacttgttccaatatattgaaattatagcgtacttgttttaatacgttttgtatgatg 200  Q
    |||||||||||||||||||||||||  |||||||||||| |||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||||||    
T  8163574 ggtgaatccaacattactagcaaca--ttttcagacttgcccaacttgttcccatatattgaaattctagcgcacttgttttaatacgttatgtatgatg 8163671  T
Q  201 ttttaacgttgatgatgt 218  Q
    |||||||||| |||||||    
T  8163672 ttttaacgtttatgatgt 8163689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 7316469 - 7316323
Alignment:
Q  1 tactcactcaattccggagcaggaccagagttttctcctgaattcggccacacaatgtcgcgacaattgcgatgcacaacaatagtatttgatggaaatt 100  Q
    |||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    ||| ||||||||||    
T  7316469 tactcactcactgccggagcaggaccagagttttctcctgaattcagccacacaatgtcgcgacaattgcgatgcacaacaa---cattggatggaaatt 7316373  T
Q  101 ggtgaatccaacattactagcaacattttttcagacttgtccaacttgtt 150  Q
    ||||||||||||||||  ||||||| ||||||||||||| ||||||||||    
T  7316372 ggtgaatccaacattaaaagcaacaatttttcagacttgcccaacttgtt 7316323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 7219578 - 7219724
Alignment:
Q  1 tactcactcaattccggagcaggaccagagttttctcctgaattcggccacacaatgtcgcgacaattgcgatgcacaacaatagtatttgatggaaatt 100  Q
    |||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||   |  ||| | ||||||||    
T  7219578 tactcactcactgccggagcaggaccagagttttctcctgaattcagccacacaatgtcgcgacaattgcgatgcacaac---atcattggttggaaatt 7219674  T
Q  101 ggtgaatccaacattactagcaacattttttcagacttgtccaacttgtt 150  Q
    ||||||||| |||||| ||||||||||||||| |||||| ||||||||||    
T  7219675 ggtgaatcctacattattagcaacattttttctgacttgcccaacttgtt 7219724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 21477957 - 21478016
Alignment:
Q  160 tgaaattatagcgtacttgttttaatacgttttgtatgatgttttaacgttgatgatgtc 219  Q
    ||||||| ||||| ||||||||||||||||| ||||||||||||||| |||  |||||||    
T  21477957 tgaaattctagcgcacttgttttaatacgttctgtatgatgttttaatgtttgtgatgtc 21478016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 10724106 - 10724158
Alignment:
Q  158 attgaaattatagcgtacttgttttaatacgttttgtatgatgttttaacgtt 210  Q
    ||||||||| || || ||||||||||||| |||||||| ||||||||| ||||    
T  10724106 attgaaattctaacgcacttgttttaatatgttttgtaagatgttttaccgtt 10724158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 10937875 - 10937927
Alignment:
Q  158 attgaaattatagcgtacttgttttaatacgttttgtatgatgttttaacgtt 210  Q
    ||||||||| || || ||||||||||||| |||||||| ||||||||| ||||    
T  10937875 attgaaattctaacgcacttgttttaatatgttttgtaagatgttttaccgtt 10937927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 20748474 - 20748422
Alignment:
Q  158 attgaaattatagcgtacttgttttaatacgttttgtatgatgttttaacgtt 210  Q
    ||||||||| ||||| ||||||||||||| |||||||||||||||||||||||    
T  20748474 attgaaattctagcgcacttgttttaatatgttttgtatgatgttttaacgtt 20748422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 19633736 - 19633786
Alignment:
Q  160 tgaaattatagcgtacttgttttaatacgttttgtatgatgttttaacgtt 210  Q
    ||||||| ||||||||||||||||||| |||||| ||||||||||||||||    
T  19633736 tgaaattctagcgtacttgttttaatatgttttgcatgatgttttaacgtt 19633786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 18035207 - 18035156
Alignment:
Q  159 ttgaaattatagcgtacttgttttaatacgttttgtatgatgttttaacgtt 210  Q
    |||||||| ||||| ||||||||||||| |||||||| ||||||| ||||||    
T  18035207 ttgaaattctagcgcacttgttttaatatgttttgtacgatgtttaaacgtt 18035156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 1919547 - 1919502
Alignment:
Q  158 attgaaattatagcgtacttgttttaatacgttttgtatgatgttt 203  Q
    ||||||||| ||||| ||||||||||||||||| |||||| |||||    
T  1919547 attgaaattctagcgcacttgttttaatacgttctgtatgttgttt 1919502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 17702254 - 17702298
Alignment:
Q  158 attgaaattatagcgtacttgttttaatacgttttgtatgatgtt 202  Q
    ||||||||| ||||| ||||||||||||| ||| |||||||||||    
T  17702254 attgaaattctagcgcacttgttttaataagttatgtatgatgtt 17702298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 25984 - 25941
Alignment:
Q  160 tgaaattatagcgtacttgttttaatacgttttgtatgatgttt 203  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||    
T  25984 tgaaattctagcgtacttgttttaatacgttctgtatgatgttt 25941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 17855042 - 17855089
Alignment:
Q  159 ttgaaattatagcgtacttgttttaatacgttttgtatgatgttttaa 206  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||    
T  17855042 ttgaaattctagcacacttgttttaatacgttttgtatgatgttttaa 17855089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 9282019 - 9281973
Alignment:
Q  160 tgaaattatagcgtacttgttttaatacgttttgtatgatgttttaa 206  Q
    ||||||| ||||| ||||||||||||||||| |||||||||||||||    
T  9282019 tgaaattctagcgcacttgttttaatacgttatgtatgatgttttaa 9281973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 14258759 - 14258809
Alignment:
Q  160 tgaaattatagcgtacttgttttaatacgttttgtatgatgttttaacgtt 210  Q
    ||||||| || || ||||||||||||| ||||| |||||||||||||||||    
T  14258759 tgaaattttaacgcacttgttttaatatgttttttatgatgttttaacgtt 14258809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 20558151 - 20558201
Alignment:
Q  160 tgaaattatagcgtacttgttttaatacgttttgtatgatgttttaacgtt 210  Q
    |||||||  |||| ||||||||||||| ||| |||||||||||||||||||    
T  20558151 tgaaattcgagcgcacttgttttaatatgttatgtatgatgttttaacgtt 20558201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 17864724 - 17864672
Alignment:
Q  158 attgaaattatagcgtacttgttttaatacgttttgtatgatgttttaacgtt 210  Q
    ||||||||| ||||| ||||||||||||| ||| |||| ||||||| ||||||    
T  17864724 attgaaattctagcgcacttgttttaatatgttatgtaagatgtttcaacgtt 17864672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 13165246 - 13165296
Alignment:
Q  160 tgaaattatagcgtacttgttttaatacgttttgtatgatgttttaacgtt 210  Q
    ||||||| ||||  ||||||||||||||||| |||||||||||||||||||    
T  13165246 tgaaattctagcacacttgttttaatacgttctgtatgatgttttaacgtt 13165296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 16510 - 16474
Alignment:
Q  174 acttgttttaatacgttttgtatgatgttttaacgtt 210  Q
    ||||||||||||||||| |||||||||||||||||||    
T  16510 acttgttttaatacgttatgtatgatgttttaacgtt 16474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 22472645 - 22472681
Alignment:
Q  174 acttgttttaatacgttttgtatgatgttttaacgtt 210  Q
    ||||||||||||||||| |||||||||||||||||||    
T  22472645 acttgttttaatacgttctgtatgatgttttaacgtt 22472681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 22481009 - 22480973
Alignment:
Q  174 acttgttttaatacgttttgtatgatgttttaacgtt 210  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  22481009 acttgttttaatatgttttgtatgatattttaacgtt 22480973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 23541724 - 23541672
Alignment:
Q  158 attgaaattatagcgtacttgttttaatacgttttgtatgatgttttaacgtt 210  Q
    ||||||||| || || |||| |||||||| ||| |||||||||||||||||||    
T  23541724 attgaaattctaccgcacttattttaatatgttatgtatgatgttttaacgtt 23541672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 12910338 - 12910381
Alignment:
Q  160 tgaaattatagcgtacttgttttaatacgttttgtatgatgttt 203  Q
    ||||||| ||||| ||||||||||||||||| ||||||||||||    
T  12910338 tgaaattttagcgcacttgttttaatacgttctgtatgatgttt 12910381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 18435 - 18385
Alignment:
Q  160 tgaaattatagcgtacttgttttaatacgttttgtatgatgttttaacgtt 210  Q
    ||||||| ||||| ||||||||||||| ||| |||| ||||||||||||||    
T  18435 tgaaattctagcgcacttgttttaatatgttctgtaagatgttttaacgtt 18385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 27829 - 27779
Alignment:
Q  160 tgaaattatagcgtacttgttttaatacgttttgtatgatgttttaacgtt 210  Q
    ||||||| ||||| ||||||||||||| ||| |||| ||||||||||||||    
T  27829 tgaaattctagcgcacttgttttaatatgttctgtaagatgttttaacgtt 27779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 110570 - 110525
Alignment:
Q  158 attgaaattatagcgtacttgttttaatacgttttgtatgatgttt 203  Q
    ||||||||| || || ||||||||||||||||| ||||||||||||    
T  110570 attgaaattttaccgcacttgttttaatacgttatgtatgatgttt 110525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 644985 - 645025
Alignment:
Q  163 aattatagcgtacttgttttaatacgttttgtatgatgttt 203  Q
    |||| ||||| ||||||||||||||||| ||||||||||||    
T  644985 aattctagcgcacttgttttaatacgttctgtatgatgttt 645025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University