View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2579_low_1_N (Length: 626)
Name: NF2579_low_1_N
Description: NF2579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2579_low_1_N |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 59 - 615
Target Start/End: Original strand, 43151032 - 43151587
Alignment:
| Q |
59 |
aagggacaaaaacttcttgtatttcatgctccgcaaagccattaaatacactactatcccctaaaattaggttatacataatttattttatgagacagtt |
158 |
Q |
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| T |
43151032 |
aagggacaaaaacttcttgtatttcatgctccgcaaagccattaaatacaccaatatcccctaaaattaggttatacataatttattttatgagacagtt |
43151131 |
T |
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| Q |
159 |
tagtggttataaattcacctttaaaataaataaatagaatgtttaaga--nnnnnnnnnnnagggagtaaaattctaggatttaaacattgatccgatcc |
256 |
Q |
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| T |
43151132 |
tagtggttataaattcacattcaaaataaataaatagaatgtttaggatttttttttttttagggagtaaaattctaggatttaaacattgatccgatcc |
43151231 |
T |
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| Q |
257 |
gactcatacaaactgacttaagctcacggagatacacaaatttattttcaaatattattcataaactaaatacttgattttgcatga---nnnnnnnnnn |
353 |
Q |
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| T |
43151232 |
gactcatacaaactgacttaagctcacggagatacacaaatttattttcaaatattattcataaactaaatactagattttgcatgattttttttttttt |
43151331 |
T |
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| Q |
354 |
nnnnnacgaattgattttgcatgattgtttgcttaaactgtgtgagtgtgacatcaattacgcccaaatcctccaatgatctgatcctcgttagtcaaaa |
453 |
Q |
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| T |
43151332 |
ttttgacgaattgattttgcatgattgtttgcttaaact------gtgtgacatcaattacgcccaaatcctccaatgatctgatcctcgttagtcaaaa |
43151425 |
T |
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| Q |
454 |
ttaaaataaagaatttctagaaaaacgaaagacctgctatattatttatgtnnnnnnnnnnnnctaaattggagaatattattagcataaacggtaagta |
553 |
Q |
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| T |
43151426 |
ttaaaataaagaatttctagaaaaacgaaagacctgctatattatttatgtaaaaaaaaaaaactaaattggagaatattattagcataaacggtaagta |
43151525 |
T |
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| Q |
554 |
aataaattgnnnnnnntaaaggtttcgtgaagcgttacaaaatacactctgttctggtctgt |
615 |
Q |
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| T |
43151526 |
aataaattgaaaaaaataaaggtttcgtgaagcgttacaaaatacactctgttctggtctgt |
43151587 |
T |
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