View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2579_low_2 (Length: 587)

Name: NF2579_low_2
Description: NF2579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2579_low_2
NF2579_low_2
[»] chr3 (16 HSPs)
chr3 (14-476)||(2768201-2768658)
chr3 (182-313)||(2755525-2755656)
chr3 (48-187)||(2805093-2805232)
chr3 (354-473)||(2796826-2796947)
chr3 (24-233)||(2806442-2806647)
chr3 (354-476)||(2856359-2856483)
chr3 (355-476)||(2789824-2789947)
chr3 (353-476)||(5412373-5412496)
chr3 (354-476)||(2748463-2748587)
chr3 (357-476)||(2839149-2839270)
chr3 (360-440)||(2806732-2806812)
chr3 (61-120)||(2755463-2755522)
chr3 (24-82)||(2748122-2748180)
chr3 (371-476)||(2818039-2818146)
chr3 (243-288)||(5412237-5412282)
chr3 (236-295)||(2748324-2748383)
[»] scaffold0691 (1 HSPs)
scaffold0691 (372-476)||(6701-6807)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 14 - 476
Target Start/End: Original strand, 2768201 - 2768658
Alignment:
Q  14 atatgctaag-ctgttgaatttcaaatggggtaggataaataaaatcattgaataaaacaaccattcatacttgatcacattcagttgacaaaatacaga 112  Q
    |||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  2768201 atatgctaagtctgttgaatttcaaatggggtaggagagataaaatcattgaataaaacaagcattcatacttgatcacattcggttgacaaaatacaga 2768300  T
Q  113 ataataaaccttttttctatgaaaaaacatcgtctgcatatagtaccaagttgataaaactaatcatgtttcatttcatcatattaccataggttgataa 212  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| || |||||||||    
T  2768301 ataataaaccttttttctttgaaaaaacatcgtctgcatatagtaccaagttgataaaactaatcacctttcatttcatcatattacgatgggttgataa 2768400  T
Q  213 caaaagtgatggcattcctttagtttgactttttgaagcttaactttccttggcaccatttaaagttactgtaccccaaggaaaaaacaagagaggaaaa 312  Q
    |||  || |         |||| |||||| |||||||| |||| ||||||||||||||||  ||||||||||| |||||||||||||||||||| || ||    
T  2768401 caactgtaa---------tttactttgac-ttttgaaggttaattttccttggcaccattcgaagttactgta-cccaaggaaaaaacaagaga-gagaa 2768488  T
Q  313 aacacaatactaggatgatatacacatgatcccaacagtat------aatatgagatgagagtaaaatggcagaaactgcagtattatctgctcttggcc 406  Q
    |||||||||||||||||||||||||| |||||||||||  |      ||||||||||  ||||||||||||||||||||| ||||||| ||||||||| |    
T  2768489 aacacaatactaggatgatatacacaagatcccaacagcttactaccaatatgagat--gagtaaaatggcagaaactgctgtattatttgctcttgggc 2768586  T
Q  407 aagttttccaattcctaaaagaagaaacaaatctgctgagtggtgt--gcagagatttttcagacatcaaag 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  2768587 aagttttccaattcctaaaagaagaaacaaatctgctgagtggtgtacacagagatttttcagacatcaaag 2768658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 182 - 313
Target Start/End: Original strand, 2755525 - 2755656
Alignment:
Q  182 ttcatttcatcatattaccataggttgataacaaaagtgatggcattcctttagtttgactttttgaagcttaactttccttggcaccatttaaagttac 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2755525 ttcatttcatcatattaccataggttgataacaaaagtgatggcattcctttagtttgactttttgaagcttaactttccttggcaccatttaaagttac 2755624  T
Q  282 tgtaccccaaggaaaaaacaagagaggaaaaa 313  Q
    ||||||||||||||||||||||||||||||||    
T  2755625 tgtaccccaaggaaaaaacaagagaggaaaaa 2755656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 48 - 187
Target Start/End: Original strand, 2805093 - 2805232
Alignment:
Q  48 ataaataaaatcattgaataaaacaaccattcatacttgatcacattcagttgacaaaatacagaataataaaccttttttctatgaaaaaacatcgtct 147  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||    ||| |||||||||||||||||||||||| || | |||||| ||||    
T  2805093 ataaataaaagcattgaataaaacaatcattcatacttgatcacattcagtgttaaaattacagaataataaaccttttttctttg-agaaacatggtct 2805191  T
Q  148 gcatatagtaccaagttgat-aaaactaatcatgtttcatt 187  Q
    |||| || |||||||||||| |||| |||||||||| ||||    
T  2805192 gcatttaataccaagttgataaaaattaatcatgttccatt 2805232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 354 - 473
Target Start/End: Original strand, 2796826 - 2796947
Alignment:
Q  354 aatatgagatgagagtaaaatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgtg 453  Q
    |||||||||||||||| |||||||||||||| ||||||||| ||| || ||  |||| ||  |||||||||||||||||||||||||||||||| |||||    
T  2796826 aatatgagatgagagtgaaatggcagaaacttcagtattatttgccctggggaaagtgtttgaattcctaaaagaagaaacaaatctgctgagtcgtgtg 2796925  T
Q  454 --cagagatttttcagacatca 473  Q
      || |||||||||||||||||    
T  2796926 cacaaagatttttcagacatca 2796947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 24 - 233
Target Start/End: Original strand, 2806442 - 2806647
Alignment:
Q  24 ctgttgaatttcaaatggggtaggataaataaaatcattgaataaaacaaccattcatacttgatcacattcagttgacaaaatacagaataataaacct 123  Q
    |||||| ||||||| |||||||| |||||||||| |||||||||||||||| |||||||||||| |||||||||| |  ||| |||| | |||||||       
T  2806442 ctgttgtatttcaa-tggggtagcataaataaaagcattgaataaaacaacaattcatacttgaccacattcagtggtaaaattacaaactaataaa--a 2806538  T
Q  124 tttttctatgaaaaaacatcgtctgcatatagtaccaagttgataaaactaatcatgtttcatttcatcatattaccataggttgataacaaaagtgatg 223  Q
        |||  || ||||||| ||||||||||| ||||||||||| ||||||||||||| |||   ||||||  |||||||| | ||||||||||||| | |    
T  2806539 aaaatcttggagaaaacatggtctgcatataataccaagttgacaaaactaatcatg-ttccgctcatcacgttaccatatgctgataacaaaagtaacg 2806637  T
Q  224 gcattccttt 233  Q
    ||||||||||    
T  2806638 gcattccttt 2806647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 354 - 476
Target Start/End: Complemental strand, 2856483 - 2856359
Alignment:
Q  354 aatatgagatgagagtaaaatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgt- 452  Q
    ||||||| |||||||| |||||||||||||||||||||| | ||| || ||  |||| ||||| |||||||||||||||||||||||  |||| |||||     
T  2856483 aatatgatatgagagttaaatggcagaaactgcagtattgtttgccctgggggaagtgttccagttcctaaaagaagaaacaaatcttttgagaggtgta 2856384  T
Q  453 -gcagagatttttcagacatcaaag 476  Q
      |||||||||||||||||||||||    
T  2856383 cacagagatttttcagacatcaaag 2856359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 355 - 476
Target Start/End: Original strand, 2789824 - 2789947
Alignment:
Q  355 atatgagatgagagtaaaatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgtg- 453  Q
    ||||||||||||| | |||||||||||||||||||||||| ||  || ||  |||| ||  ||||||||||||||||||||||||| ||||||||||||     
T  2789824 atatgagatgagactgaaatggcagaaactgcagtattatttgtcctgggggaagtgttggaattcctaaaagaagaaacaaatctcctgagtggtgtgc 2789923  T
Q  454 -cagagatttttcagacatcaaag 476  Q
     || |||||||| |||||||||||    
T  2789924 acaaagattttttagacatcaaag 2789947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 353 - 476
Target Start/End: Original strand, 5412373 - 5412496
Alignment:
Q  353 taatatgagatgagagtaaaatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgt 452  Q
    ||||||||| | ||||| |||||||||||||||||||||| | ||| |||||  || | |||||||||||| ||||||||||||||| |||||  ||| |    
T  5412373 taatatgagctaagagttaaatggcagaaactgcagtattgtttgcccttgggaaactgttccaattcctagaagaagaaacaaatcggctgaaaggtat 5412472  T
Q  453 gcagagatttttcagacatcaaag 476  Q
     || ||||||||||||||||||||    
T  5412473 acacagatttttcagacatcaaag 5412496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 354 - 476
Target Start/End: Original strand, 2748463 - 2748587
Alignment:
Q  354 aatatgagatgagagtaaaatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgt- 452  Q
    |||||||||||||||| |||||||||||||||||||||  | ||  || ||  |||| ||||| ||||||||||||||||||||||| |||||  ||||     
T  2748463 aatatgagatgagagtgaaatggcagaaactgcagtatcgtttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgta 2748562  T
Q  453 -gcagagatttttcagacatcaaag 476  Q
      |||||||||||||||||||||||    
T  2748563 cacagagatttttcagacatcaaag 2748587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 357 - 476
Target Start/End: Complemental strand, 2839270 - 2839149
Alignment:
Q  357 atgagatgagagtaaaatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgt--gc 454  Q
    |||| |||||||| |||||||||| ||||||||||| | ||| || ||  |||| ||| ||||||||||||||||||||||||| ||||| |||||   |    
T  2839270 atgatatgagagttaaatggcagagactgcagtattgtttgccctaggggaagtgttcaaattcctaaaagaagaaacaaatcttctgagaggtgtacac 2839171  T
Q  455 agagatttttcagacatcaaag 476  Q
    |||||||||||||| |||||||    
T  2839170 agagatttttcagatatcaaag 2839149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 360 - 440
Target Start/End: Original strand, 2806732 - 2806812
Alignment:
Q  360 agatgagagtaaaatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatct 440  Q
    |||||||||| |||||||||||||||||||||||| ||| ||||   |||| |||| ||||||||||||||||||||||||    
T  2806732 agatgagagtgaaatggcagaaactgcagtattatttgcccttgatgaagtgttccgattcctaaaagaagaaacaaatct 2806812  T

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Target: chr3; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 2755463 - 2755522
Alignment:
Q  61 ttgaataaaacaaccattcatacttgatcacattcagttgacaaaatacagaataataaa 120  Q
    |||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||    
T  2755463 ttgaataaaacaagaattcatacttgatcacattccgttgacaaaatacagaataataaa 2755522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 2748122 - 2748180
Alignment:
Q  24 ctgttgaatttcaaatggggtaggataaataaaatcattgaataaaacaaccattcata 82  Q
    ||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||    
T  2748122 ctgttgaatttcaaacggggtagcataaataaaatcattcaattaaacaaccattcata 2748180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 371 - 476
Target Start/End: Original strand, 2818039 - 2818146
Alignment:
Q  371 aaatggcagaaactgcagtattatctgctcttggcc-aagttttccaattcctaaaagaagaaacaaatctgctgagtggtgt--gcagagatttttcag 467  Q
    ||||||||||||||||||||| ||| || |||| |  |||| || || |||||||||||||||||||| || ||||| |||||   ||||||||||||||    
T  2818039 aaatggcagaaactgcagtatcatcagc-cttgtcggaagtgtttcagttcctaaaagaagaaacaaagcttctgagaggtgtacacagagatttttcag 2818137  T
Q  468 acatcaaag 476  Q
    |||||||||    
T  2818138 acatcaaag 2818146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 5412237 - 5412282
Alignment:
Q  243 ttttgaagcttaactttccttggcaccatttaaagttactgtaccc 288  Q
    ||||||||||||| ||||||| |||||||| |||||||||||||||    
T  5412237 ttttgaagcttaaatttccttagcaccattcaaagttactgtaccc 5412282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 2748324 - 2748383
Alignment:
Q  236 tttgactttttgaagcttaactttccttggcaccatttaaagttactgtaccccaaggaa 295  Q
    ||||||||||||||| |||| || |||||| |||||| ||||||||||||| ||| ||||    
T  2748324 tttgactttttgaaggttaatttgccttggaaccattcaaagttactgtactccagggaa 2748383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 476
Target Start/End: Complemental strand, 6807 - 6701
Alignment:
Q  372 aatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgt--gcagagatttttcagac 469  Q
    ||||||||||||||||||||| | ||| || ||  || | ||||||||||||||| ||||||||||||| ||||| |||||   || ||||||| |||||    
T  6807 aatggcagaaactgcagtattgtttgccctcggagaattgttccaattcctaaaaaaagaaacaaatcttctgagaggtgtacacacagattttacagac 6708  T
Q  470 atcaaag 476  Q
    |||||||    
T  6707 atcaaag 6701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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