View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2579_low_20 (Length: 253)
Name: NF2579_low_20
Description: NF2579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2579_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 48053892 - 48054136
Alignment:
| Q |
1 |
cattcctttatcaaaatttaaaggaagagttcaaaacataaacttcctggctttgactgaagctccaatttcagtaagtatgacaataacaagaaaatac |
100 |
Q |
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| T |
48053892 |
cattcctttatcaaaatttaaaggaagagttcaaaacgtaaacttcttggctttgactgaagctccaatttcagtaagtatgacaataacaagaaaatac |
48053991 |
T |
|
| Q |
101 |
agaaatatttgacaggcttgatagttaaggcctagaaattacccctgccccaagaaacagaagcacagacagaaatctaactgcagtatcaatcaaggtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
48053992 |
agaaatatttgacaggcttgatagttaaggcctagaaattacccctgccccaagaaacagaagcatagacggaaatctaactgcagtatcaatcaaggtg |
48054091 |
T |
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| Q |
201 |
gtttctgatgcatagtttgatctgtctaatgcatttattcatctc |
245 |
Q |
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| T |
48054092 |
gtttctgatgcatagtttgatctgtctaatgcatttattcatctc |
48054136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 177
Target Start/End: Complemental strand, 29814198 - 29814061
Alignment:
| Q |
40 |
aaacttcctggctttgactgaagctccaatttcagtaagtatgacaataacaagaaaatacagaaatatttgacaggcttgatagttaaggcctagaaat |
139 |
Q |
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| T |
29814198 |
aaacttcttggctttgacagaagccctgatttcaataaatatgacaataacaagaaaatgcagaaaaattcgtgaagcacgatggttaaagcctagaaat |
29814099 |
T |
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| Q |
140 |
tacccctgccccaagaaacagaagcacagacagaaatc |
177 |
Q |
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| T |
29814098 |
tacccctgccccagaaaatgggagcatagacagaaatc |
29814061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 29814007 - 29813958
Alignment:
| Q |
198 |
gtggtttctgatgcatagtttgatctgtctaatgcatttattcatctcac |
247 |
Q |
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| T |
29814007 |
gtggtttctgatgcatagtttgattttcctattgcatttatttatctcac |
29813958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 48052744 - 48052797
Alignment:
| Q |
124 |
gttaaggcctagaaattacccctgccccaagaaacagaagcacagacagaaatc |
177 |
Q |
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| T |
48052744 |
gttaaggcctagatattatccctgccccaagaaatggaagcatagccagaaatc |
48052797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 48052671 - 48052727
Alignment:
| Q |
41 |
aacttcctggctttgactgaagctccaatttcagtaagtatgacaataacaagaaaa |
97 |
Q |
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|||||| |||| ||||| ||| | |||||||||||| ||||||||||||||||||| |
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| T |
48052671 |
aacttcttggccttgacagaatccccaatttcagtagatatgacaataacaagaaaa |
48052727 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 1173288 - 1173329
Alignment:
| Q |
198 |
gtggtttctgatgcatagtttgatctgtctaatgcatttatt |
239 |
Q |
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| T |
1173288 |
gtggtttctgatgtatagtttgatttgcctaatgcatttatt |
1173329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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