View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2579_low_3 (Length: 480)
Name: NF2579_low_3
Description: NF2579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2579_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 196 - 450
Target Start/End: Original strand, 35506298 - 35506552
Alignment:
| Q |
196 |
gttggtgttgttacaggttttgaagatgttcatgttaggtctaggaatgttcttgaattagaccttaaccttccggcaccggaggaagatctccgcgatt |
295 |
Q |
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| T |
35506298 |
gttggtgttgttacaggttttgaagatgttcatgttaggtctaggaatgttcttgaattagaccttaaccttccggcaccggaggaagatctccgcgatt |
35506397 |
T |
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| Q |
296 |
cgacgtttcagtttccggcgttggtgggttgccattattaggccagcgtgggatgaaggggaggggtttatatttttatttaatttgatcaataatgatc |
395 |
Q |
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| T |
35506398 |
cgacgtttcagtttccggcgttggtgggttgccattattaggccagcgtgggatgaaggggaggggtttatatttttatttaatttgatcaataatgatc |
35506497 |
T |
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| Q |
396 |
attgtgaattattattcttagcttcattttaatttacaattattccaaattatta |
450 |
Q |
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| T |
35506498 |
attgtgaattattattcttagcttcattttaatttacaattattccaaattatta |
35506552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 10 - 174
Target Start/End: Original strand, 35506103 - 35506267
Alignment:
| Q |
10 |
aagaatattaaccctcttgttcctccagtttctcttgaattaaggtgtggtgttaatatcaacttcaaacctaataaggttcatgggtgttcaatatgtg |
109 |
Q |
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| T |
35506103 |
aagaatattaaccctcttgttcctccagtttctcttgaattaaggtgtggtgttaatatcaacttcaaacctaataaggttcatgggtgttcaatatgtg |
35506202 |
T |
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| Q |
110 |
gagctgaattcacatcaggtcaagcattgggtggtcacatgaggagacacagagcttgtattaat |
174 |
Q |
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| T |
35506203 |
gagctgaattcacatcaggtcaagcattgggtggtcacatgaggagacacagagcttgtattaat |
35506267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 20925644 - 20925589
Alignment:
| Q |
259 |
cttaaccttccggcaccggaggaagatctccgcgattcgacgtttcagtttccggc |
314 |
Q |
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| T |
20925644 |
cttaaccttccggcaccggaagaagatatccgcgaatcgaagtttcagtttccggc |
20925589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 40689908 - 40689977
Alignment:
| Q |
84 |
taaggttcatgggtgttcaatatgtggagctgaattcacatcaggtcaagcattgggtggtcacatgagg |
153 |
Q |
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| T |
40689908 |
taaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatgagg |
40689977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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