View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2579_low_5 (Length: 453)

Name: NF2579_low_5
Description: NF2579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2579_low_5
NF2579_low_5
[»] chr2 (7 HSPs)
chr2 (305-440)||(23718911-23719046)
chr2 (305-440)||(24106583-24106718)
chr2 (32-70)||(13922329-13922367)
chr2 (255-290)||(23718874-23718909)
chr2 (255-290)||(24106546-24106581)
chr2 (322-368)||(11551161-11551207)
chr2 (33-70)||(11829102-11829139)
[»] chr3 (3 HSPs)
chr3 (32-73)||(8436810-8436851)
chr3 (32-68)||(49786537-49786573)
chr3 (330-368)||(39552465-39552503)
[»] chr1 (7 HSPs)
chr1 (32-73)||(9672886-9672927)
chr1 (32-70)||(51787415-51787453)
chr1 (32-73)||(20186755-20186796)
chr1 (32-71)||(30339780-30339819)
chr1 (318-368)||(23524813-23524863)
chr1 (329-369)||(7550896-7550936)
chr1 (329-369)||(41032931-41032971)
[»] chr7 (8 HSPs)
chr7 (32-70)||(496827-496865)
chr7 (32-70)||(11765851-11765889)
chr7 (32-70)||(42535132-42535170)
chr7 (33-68)||(31427170-31427205)
chr7 (33-71)||(2286603-2286641)
chr7 (45-73)||(7527178-7527206)
chr7 (332-364)||(44651992-44652024)
chr7 (329-365)||(45204574-45204610)
[»] chr5 (2 HSPs)
chr5 (32-70)||(38280190-38280228)
chr5 (33-68)||(1501287-1501322)
[»] chr4 (3 HSPs)
chr4 (34-72)||(49866785-49866823)
chr4 (322-373)||(41749676-41749727)
chr4 (329-369)||(41402220-41402260)
[»] chr8 (3 HSPs)
chr8 (33-70)||(3780276-3780313)
chr8 (316-400)||(39138988-39139072)
chr8 (33-70)||(4076861-4076898)
[»] chr6 (1 HSPs)
chr6 (33-73)||(33594433-33594473)
[»] scaffold0460 (1 HSPs)
scaffold0460 (329-369)||(1253-1293)


Alignment Details
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 305 - 440
Target Start/End: Original strand, 23718911 - 23719046
Alignment:
Q  305 taagacataatatattttgtccatgtgagcttaacttagttgatttaaacaatgcataaaatatataaactcaggtgtttaaactccgaccaccaccnnn 404  Q
    ||||||||||||||||||||||| ||||| ||| || ||||||||| ||||| |||||||||||  ||  || |||||| ||||||||||||||||        
T  23718911 taagacataatatattttgtccacgtgagtttagctcagttgatttgaacaacgcataaaatatgcaaggtctggtgttcaaactccgaccaccacaaaa 23719010  T
Q  405 nnnnnttacaacgtagtatattttagaatggtgttc 440  Q
         ||||||| ||||||||||||||||| |||||    
T  23719011 aaaaattacaacatagtatattttagaatgttgttc 23719046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 305 - 440
Target Start/End: Original strand, 24106583 - 24106718
Alignment:
Q  305 taagacataatatattttgtccatgtgagcttaacttagttgatttaaacaatgcataaaatatataaactcaggtgtttaaactccgaccaccaccnnn 404  Q
    ||||||||||||||||||||||| ||||| ||| || ||||||||| ||||| |||||||||||  ||  || |||||| ||||||||||||||||        
T  24106583 taagacataatatattttgtccacgtgagtttagctcagttgatttgaacaacgcataaaatatgcaaggtctggtgttcaaactccgaccaccacaaaa 24106682  T
Q  405 nnnnnttacaacgtagtatattttagaatggtgttc 440  Q
         ||||||| ||||||||||||||||| |||||    
T  24106683 aaaaattacaacatagtatattttagaatgttgttc 24106718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 13922329 - 13922367
Alignment:
Q  32 agtggtatggaaatatgagtggtctaccaatcattttcc 70  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13922329 agtggtatggaaatatgagtggtctaccaatcattttcc 13922367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 290
Target Start/End: Original strand, 23718874 - 23718909
Alignment:
Q  255 tttgttaaaatgttggtctctcattttactttttta 290  Q
    ||||| ||||||||||||||||||||||||||||||    
T  23718874 tttgtcaaaatgttggtctctcattttactttttta 23718909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 290
Target Start/End: Original strand, 24106546 - 24106581
Alignment:
Q  255 tttgttaaaatgttggtctctcattttactttttta 290  Q
    ||||| ||||||||||||||||||||||||||||||    
T  24106546 tttgtcaaaatgttggtctctcattttactttttta 24106581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 368
Target Start/End: Original strand, 11551161 - 11551207
Alignment:
Q  322 tgtccatgtgagcttaacttagttgatttaaacaatgcataaaatat 368  Q
    ||||| |||||||||| ||||||||||||  ||||||||||||||||    
T  11551161 tgtccttgtgagcttagcttagttgatttcgacaatgcataaaatat 11551207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 11829102 - 11829139
Alignment:
Q  33 gtggtatggaaatatgagtggtctaccaatcattttcc 70  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  11829102 gtggtatgaaaatataagtggtctaccaatcattttcc 11829139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 8436851 - 8436810
Alignment:
Q  32 agtggtatggaaatatgagtggtctaccaatcattttccttt 73  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8436851 agtggtatggaaatatgagtggtctaccaatcattttccttt 8436810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 49786537 - 49786573
Alignment:
Q  32 agtggtatggaaatatgagtggtctaccaatcatttt 68  Q
    ||||||||| |||||||||||||||||||||||||||    
T  49786537 agtggtatgaaaatatgagtggtctaccaatcatttt 49786573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 368
Target Start/End: Original strand, 39552465 - 39552503
Alignment:
Q  330 tgagcttaacttagttgatttaaacaatgcataaaatat 368  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  39552465 tgagcttaacttagttggtataaacaatgcataaaatat 39552503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 9672927 - 9672886
Alignment:
Q  32 agtggtatggaaatatgagtggtctaccaatcattttccttt 73  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  9672927 agtggtatggaaatatgagtggtctaccaatcattttccttt 9672886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 51787415 - 51787453
Alignment:
Q  32 agtggtatggaaatatgagtggtctaccaatcattttcc 70  Q
    |||||||||||||||||||||||||||||||||||||||    
T  51787415 agtggtatggaaatatgagtggtctaccaatcattttcc 51787453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 20186796 - 20186755
Alignment:
Q  32 agtggtatggaaatatgagtggtctaccaatcattttccttt 73  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  20186796 agtggtatggaaatatgagtggtctaccaatcatttttcttt 20186755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 30339780 - 30339819
Alignment:
Q  32 agtggtatggaaatatgagtggtctaccaatcattttcct 71  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  30339780 agtggtataaaaatatgagtggtctaccaatcattttcct 30339819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 368
Target Start/End: Original strand, 23524813 - 23524863
Alignment:
Q  318 attttgtccatgtgagcttaacttagttgatttaaacaatgcataaaatat 368  Q
    |||| |||| ||||||||||||| ||||||||  |||||||||||||||||    
T  23524813 atttggtccttgtgagcttaactcagttgattggaacaatgcataaaatat 23524863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 7550896 - 7550936
Alignment:
Q  329 gtgagcttaacttagttgatttaaacaatgcataaaatata 369  Q
    |||||||||||| ||||||| | ||||||||||||||||||    
T  7550896 gtgagcttaactcagttgatatgaacaatgcataaaatata 7550936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 41032931 - 41032971
Alignment:
Q  329 gtgagcttaacttagttgatttaaacaatgcataaaatata 369  Q
    |||||||||||| ||||||| | ||||||||||||||||||    
T  41032931 gtgagcttaactcagttgatatgaacaatgcataaaatata 41032971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 496827 - 496865
Alignment:
Q  32 agtggtatggaaatatgagtggtctaccaatcattttcc 70  Q
    |||||||||||||||||||||||||||||||||||||||    
T  496827 agtggtatggaaatatgagtggtctaccaatcattttcc 496865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 11765851 - 11765889
Alignment:
Q  32 agtggtatggaaatatgagtggtctaccaatcattttcc 70  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11765851 agtggtatggaaatatgagtggtctaccaatcattttcc 11765889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 42535170 - 42535132
Alignment:
Q  32 agtggtatggaaatatgagtggtctaccaatcattttcc 70  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42535170 agtggtatggaaatatgagtggtctaccaatcattttcc 42535132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 68
Target Start/End: Complemental strand, 31427205 - 31427170
Alignment:
Q  33 gtggtatggaaatatgagtggtctaccaatcatttt 68  Q
    |||||||| |||||||||||||||||||||||||||    
T  31427205 gtggtatgaaaatatgagtggtctaccaatcatttt 31427170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 2286603 - 2286641
Alignment:
Q  33 gtggtatggaaatatgagtggtctaccaatcattttcct 71  Q
    |||||||| || |||||||||||||||||||||||||||    
T  2286603 gtggtatgaaattatgagtggtctaccaatcattttcct 2286641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 73
Target Start/End: Complemental strand, 7527206 - 7527178
Alignment:
Q  45 tatgagtggtctaccaatcattttccttt 73  Q
    |||||||||||||||||||||||||||||    
T  7527206 tatgagtggtctaccaatcattttccttt 7527178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 364
Target Start/End: Complemental strand, 44652024 - 44651992
Alignment:
Q  332 agcttaacttagttgatttaaacaatgcataaa 364  Q
    ||||||||||||||||| |||||||||||||||    
T  44652024 agcttaacttagttgatataaacaatgcataaa 44651992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 45204610 - 45204574
Alignment:
Q  329 gtgagcttaacttagttgatttaaacaatgcataaaa 365  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  45204610 gtgagcttaacttagttgattgaaacaatgtataaaa 45204574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 38280228 - 38280190
Alignment:
Q  32 agtggtatggaaatatgagtggtctaccaatcattttcc 70  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38280228 agtggtatggaaatatgagtggtctaccaatcattttcc 38280190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 68
Target Start/End: Complemental strand, 1501322 - 1501287
Alignment:
Q  33 gtggtatggaaatatgagtggtctaccaatcatttt 68  Q
    |||||||| |||||||||||||||||||||||||||    
T  1501322 gtggtatgaaaatatgagtggtctaccaatcatttt 1501287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 49866785 - 49866823
Alignment:
Q  34 tggtatggaaatatgagtggtctaccaatcattttcctt 72  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  49866785 tggtatgaaaatatgagtggtctaccaatcattttcctt 49866823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 41749676 - 41749727
Alignment:
Q  322 tgtccatgtgagcttaacttagttgatttaaacaatgcataaaatatataaa 373  Q
    |||||||||||| |||| ||||||||| | ||||||| ||||||||||||||    
T  41749676 tgtccatgtgagtttaatttagttgatatgaacaatgtataaaatatataaa 41749727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 41402220 - 41402260
Alignment:
Q  329 gtgagcttaacttagttgatttaaacaatgcataaaatata 369  Q
    |||||||||| | |||||||| |||||||||||||||||||    
T  41402220 gtgagcttaagtcagttgattaaaacaatgcataaaatata 41402260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 3780313 - 3780276
Alignment:
Q  33 gtggtatggaaatatgagtggtctaccaatcattttcc 70  Q
    |||||||| |||||||||||||||||||||||||||||    
T  3780313 gtggtatgaaaatatgagtggtctaccaatcattttcc 3780276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 400
Target Start/End: Complemental strand, 39139072 - 39138988
Alignment:
Q  316 atattttgtccatgtgagcttaacttagttgatttaaacaatgcataaaatatataaactcaggtgtttaaactccgaccaccac 400  Q
    |||||||||||| ||||||||| || ||||| ||| || |||||||||||||| |||  |  || ||| ||||||||||||||||    
T  39139072 atattttgtccacgtgagcttagctcagttggttttaataatgcataaaatatgtaaggttcggggttcaaactccgaccaccac 39138988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 4076898 - 4076861
Alignment:
Q  33 gtggtatggaaatatgagtggtctaccaatcattttcc 70  Q
    |||||||| || ||||||||||||||||||||||||||    
T  4076898 gtggtatgaaattatgagtggtctaccaatcattttcc 4076861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 33594473 - 33594433
Alignment:
Q  33 gtggtatggaaatatgagtggtctaccaatcattttccttt 73  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  33594473 gtggtatgaaattatgagtggtctaccaatcattttccttt 33594433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 1253 - 1293
Alignment:
Q  329 gtgagcttaacttagttgatttaaacaatgcataaaatata 369  Q
    ||||||||| |||||||| ||| ||||||||||||||||||    
T  1253 gtgagcttagcttagttggtttgaacaatgcataaaatata 1293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University