View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2579_low_8 (Length: 374)

Name: NF2579_low_8
Description: NF2579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2579_low_8
NF2579_low_8
[»] chr4 (3 HSPs)
chr4 (39-311)||(54425164-54425426)
chr4 (48-147)||(54430331-54430430)
chr4 (313-346)||(54424947-54424980)
[»] chr7 (1 HSPs)
chr7 (253-329)||(37381841-37381911)
[»] scaffold0317 (1 HSPs)
scaffold0317 (249-294)||(19789-19833)
[»] chr3 (1 HSPs)
chr3 (253-290)||(30694356-30694392)
[»] chr6 (1 HSPs)
chr6 (293-329)||(15107429-15107465)


Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 39 - 311
Target Start/End: Complemental strand, 54425426 - 54425164
Alignment:
Q  39 tgaaggcgttgaaccatgatttgcaaacaagcatcgcaccacgccattgatcgtcaaagctgagtcgagataggatattgatgaggcactcacgagtcaa 138  Q
    ||||||||||||||||||||||||||||||||| || ||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  54425426 tgaaggcgttgaaccatgatttgcaaacaagcaacgaaccgcgccattgatcttcaaagctgagtcgagataggatgttgatgaggcactcacgagtcaa 54425327  T
Q  139 ctcgccccactcggcttcgccttcttcttccatttttgttccttctattgtttggatttagacggaactgcgtccctagtaatagatagatcatttttag 238  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    ||||||||    
T  54425326 ctcgccccactcggcttcgctttctacttccatttttgttccttctattgtttggatttagacggaactgcgtccattgtaatagata----atttttag 54425231  T
Q  239 actccaatccaacacgtgcgatgcacgg--gtttttgtagagtttcatatataactataaaatatcaaattggtc 311  Q
    ||     |||||||||||||||||||||   |||||||||||||||||||   | ||||||||||||||||||||    
T  54425230 ac-----tccaacacgtgcgatgcacggttttttttgtagagtttcatat---agtataaaatatcaaattggtc 54425164  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 147
Target Start/End: Original strand, 54430331 - 54430430
Alignment:
Q  48 tgaaccatgatttgcaaacaagcatcgcaccacgccattgatcgtcaaagctgagtcgagataggatattgatgaggcactcacgagtcaactcgcccca 147  Q
    ||||||||||||| || |||||||| ||||| ||||||||||| |||| | ||||||||   | ||| ||||||||||| || ||||  |||||||||||    
T  54430331 tgaaccatgatttacatacaagcattgcaccgcgccattgatcttcaacggtgagtcgaatgaagatgttgatgaggcaatctcgagataactcgcccca 54430430  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 346
Target Start/End: Complemental strand, 54424980 - 54424947
Alignment:
Q  313 tattattaatcgtagaggtggtccagaccgtcct 346  Q
    ||||||||||||||||||||||||||||||||||    
T  54424980 tattattaatcgtagaggtggtccagaccgtcct 54424947  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 37381911 - 37381841
Alignment:
Q  253 cgtgcgatgcacgggtttttgtagagtttcatatataactataaaatatcaaattggtcatattattaatcgtagag 329  Q
    ||||||||||||| ||||||||||||||||||||      ||||||||||||||||   ||||||||||||||||||    
T  37381911 cgtgcgatgcacgtgtttttgtagagtttcatat------ataaaatatcaaattgactatattattaatcgtagag 37381841  T

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Target: scaffold0317 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 19789 - 19833
Alignment:
Q  249 aacacgtgcgatgcacgggtttttgtagagtttcatatataactat 294  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||    
T  19789 aacacgtgcgatgcacaggtttt-gtagagtttcatatataactat 19833  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 290
Target Start/End: Original strand, 30694356 - 30694392
Alignment:
Q  253 cgtgcgatgcacgggtttttgtagagtttcatatataa 290  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  30694356 cgtgcgatgcacgggtttt-gtagagtttcatatataa 30694392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 329
Target Start/End: Original strand, 15107429 - 15107465
Alignment:
Q  293 ataaaatatcaaattggtcatattattaatcgtagag 329  Q
    |||||||||||||||||  ||||||||||||||||||    
T  15107429 ataaaatatcaaattggctatattattaatcgtagag 15107465  T

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