View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2580_high_10 (Length: 428)
Name: NF2580_high_10
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2580_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 3924045 - 3924440
Alignment:
| Q |
18 |
gaactttacatgaccaatgaacatacctgacgtcctgtctttcaagaaaacatctacgttgctagagctattttttccattatcaaaagcaaacacttgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3924045 |
gaactttacatgaccaatgaacatacctgacgtcctgtctttcaagaaaacatctacgttgctagagctattttttccattatcaaaagcaaacacttgg |
3924144 |
T |
|
| Q |
118 |
ttcaatgatgagttgctggtttctaagaaaaatgttgttgcttttacgtttccaagtactacctctacatagagattatggatattgggaaagtctatga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3924145 |
ttcaatgatgagttgctggtttctaagaaaaatgttgttgcttttgcgtttccaagtaccacctctacatagagattatggatattgggaaagtctatga |
3924244 |
T |
|
| Q |
218 |
cctttacaacccttacaaataagaactccatttcttcaacaaggtcatatctccttgtaagcttatcagcttcaaatgcagcattattgttaacactagt |
317 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3924245 |
cctttacaacccttacaaataagaattccatttcttcaacaaggtcatatctccttgtaagcttatcagcttcaaatgcagcattattgttaacactagt |
3924344 |
T |
|
| Q |
318 |
ctcctttggtgcattctcattatttgccattttcttaacctgcattgtacaaataactttattagctttattaccttatcatgcaagtgtagaataat |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3924345 |
ctcctttggtgcattctcattatttgccattttcttaacctgcattgtacaaataactt--ttagctttattaccttatcatgcaagtgtagaataat |
3924440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University