View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2580_high_13 (Length: 393)
Name: NF2580_high_13
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2580_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 17 - 383
Target Start/End: Original strand, 36424573 - 36424939
Alignment:
| Q |
17 |
caagttgatggcaacttcttcacatacaccggtttccgcgcccttactgtaccaaacatacaaccctcatttttcgtagcattgaaagcaagtaaaaaag |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
36424573 |
caagttgatggcaacttcttcacatacaccggtttccgcgcccttactgtaccaaacatacaaccctcatttttcgtggcattgaaagcaagcaaaaaag |
36424672 |
T |
|
| Q |
117 |
aatttccagctcttgatggacaaagtgtatcatatgctgctctaatgtacccacctggaaccatcaatccaccacatacacaccctcgttcagccgagct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36424673 |
aatttccagctcttgatggacaaagtgtatcatatgctgctctaatgtacccacctggaaccatcaatccaccacacacacaccctcgttcagccgagct |
36424772 |
T |
|
| Q |
217 |
actcttccttgttaaaggttcccttaatgttggtttcgttgacacaaccaacaagctatacactcaaacacttcaacccggtgacatgtttgtgtttcca |
316 |
Q |
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|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36424773 |
actcttcctcgttaaaggttcccttaatgttggtttcgttgacacaaccaacaagctatacactcaaacacttcaacccggtgacatgtttgtgtttcca |
36424872 |
T |
|
| Q |
317 |
aagggacttgttcattttcaattcaattctaatactacaaaatctgctttagctttttcagcctttg |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36424873 |
aagggacttgttcattttcaattcaattctaatactacaaaatctgctttagctttttcggcctttg |
36424939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 383
Target Start/End: Original strand, 36421049 - 36421415
Alignment:
| Q |
17 |
caagttgatggcaacttcttcacatacaccggtttccgcgcccttactgtaccaaacatacaaccctcatttttcgtagcattgaaagcaagtaaaaaag |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
36421049 |
caagttgatggcaacttcttcacatacaccggtttccgcgcccttactgtaccaaacatacaaccctcatttttcgtggcattgaaagcaagcaaaaaag |
36421148 |
T |
|
| Q |
117 |
aatttccagctcttgatggacaaagtgtatcatatgctgctctaatgtacccacctggaaccatcaatccaccacatacacaccctcgttcagccgagct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36421149 |
aatttccagctcttgatggacaaagtgtatcatatgctgctctaatgtacccacctggaaccatcaatccaccacatacacaccctcgttcagccgagct |
36421248 |
T |
|
| Q |
217 |
actcttccttgttaaaggttcccttaatgttggtttcgttgacacaaccaacaagctatacactcaaacacttcaacccggtgacatgtttgtgtttcca |
316 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| ||||| ||||| ||||||||||||||||||||| |
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| T |
36421249 |
actcttcctcgttaaaggttcccttaatgttggttttgttgacacaaccaataagctattcactcagacactacaacctggtgacatgtttgtgtttcca |
36421348 |
T |
|
| Q |
317 |
aagggacttgttcattttcaattcaattctaatactacaaaatctgctttagctttttcagcctttg |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
36421349 |
aagggacttgttcattttcaattcaattctaatactacaaaatctgctttagctttttcggcctttg |
36421415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 383
Target Start/End: Original strand, 36427546 - 36427912
Alignment:
| Q |
17 |
caagttgatggcaacttcttcacatacaccggtttccgcgcccttactgtaccaaacatacaaccctcatttttcgtagcattgaaagcaagtaaaaaag |
116 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||| | |||||||||||| |||||| |||| ||| ||||||||||| ||| || |
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| T |
36427546 |
caagttgatggcaacttcttcacattcaccggtttccgcgcacttcttccaccaaacatacagccctcaactttcaaagccttgaaagcaagcaaagcag |
36427645 |
T |
|
| Q |
117 |
aatttccagctcttgatggacaaagtgtatcatatgctgctctaatgtacccacctggaaccatcaatccaccacatacacaccctcgttcagccgagct |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
36427646 |
aatttccagctcttgacggacaaagtgtcgcatatgctgctctaatatacccacctggaaccatcaatccaccacacacacaccctcgttcagccgagct |
36427745 |
T |
|
| Q |
217 |
actcttccttgttaaaggttcccttaatgttggtttcgttgacacaaccaacaagctatacactcaaacacttcaacccggtgacatgtttgtgtttcca |
316 |
Q |
| |
|
||||||||| | ||||||||||| ||||||||||| || ||||| || || ||||||| |||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
36427746 |
actcttcctcgcgaaaggttccctgaatgttggttttgtggacaccactaataagctattcactcaaacactacaacccggtgacatgtttgtgtttcca |
36427845 |
T |
|
| Q |
317 |
aagggacttgttcattttcaattcaattctaatactacaaaatctgctttagctttttcagcctttg |
383 |
Q |
| |
|
|||||||||||||||||||| |||||| || ||||| ||||| ||||||| |||||||| ||||||| |
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|
| T |
36427846 |
aagggacttgttcattttcagttcaatgctgatacttcaaaacctgctttggctttttctgcctttg |
36427912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 132 - 264
Target Start/End: Original strand, 19148343 - 19148475
Alignment:
| Q |
132 |
atggacaaagtgtatcatatgctgctctaatgtacccacctggaaccatcaatccaccacatacacaccctcgttcagccgagctactcttccttgttaa |
231 |
Q |
| |
|
||||||||||||| |||||||||||||| | || |||| | ||| ||||||||||| |||||||| |||||||| || |||||||| ||||| | |
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|
| T |
19148343 |
atggacaaagtgtgtcatatgctgctcttcaattccaacctaacagcataaatccaccacacacacacccacgttcagctgaactactctttgttgttca |
19148442 |
T |
|
| Q |
232 |
aggttcccttaatgttggtttcgttgacacaac |
264 |
Q |
| |
|
|||||| ||| | ||||| || ||||||||||| |
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| T |
19148443 |
aggttcacttcaagttgggtttgttgacacaac |
19148475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 262
Target Start/End: Complemental strand, 19144650 - 19144520
Alignment:
| Q |
132 |
atggacaaagtgtatcatatgctgctctaatgtacccacctggaaccatcaatccaccacatacacaccctcgttcagccgagctactcttccttgttaa |
231 |
Q |
| |
|
||||||||||||| |||||||||||||| | || |||| | ||| ||||||||||| |||||||| |||||||| || |||||||| ||||| | |
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| T |
19144650 |
atggacaaagtgtgtcatatgctgctcttcaattccaacctaacagcataaatccaccacacacacacccacgttcagctgaactactctttgttgttca |
19144551 |
T |
|
| Q |
232 |
aggttcccttaatgttggtttcgttgacaca |
262 |
Q |
| |
|
|||||| ||| | ||||| || ||||||||| |
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|
| T |
19144550 |
aggttcacttcaagttgggtttgttgacaca |
19144520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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