View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2580_high_15 (Length: 377)
Name: NF2580_high_15
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2580_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 367
Target Start/End: Complemental strand, 1875710 - 1875360
Alignment:
| Q |
17 |
caaattcatcaacccaactgtcactgaaagtgaagtgactgaaaagtccttttcaggaaacaaatcctttgacaacttacaaacagctatcacagagttc |
116 |
Q |
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| T |
1875710 |
caaattcatcaacccaactgtcactgaaagtgaagtgactgaaaagtccttttcaggaaacaaatcctttgacaacttacaaacagctatcacagagttc |
1875611 |
T |
|
| Q |
117 |
aagattgtcaaaggaagttgaggaattgtacctttgataaaacctttcttccaagcatgtttagtgaatttcaccacttctattgaagagggtccaaact |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1875610 |
aagattgtcaaaggaagttgaggaattgtacctttgataaaacctttcttccaagcatgtttagtgaatttcaccacttctattgaagagggtccaaact |
1875511 |
T |
|
| Q |
217 |
taatttcatgcaccacattaggcctttttatgaatgccaaaataacacctaaaacaaagattacaaaagcagaaggaagtgaaaaaacaatctttttcac |
316 |
Q |
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| T |
1875510 |
taatttcatgcaccacattaggcctttttatgaatgccaaaataacacctaaaacaaagattacaaaagcagaaggaagtgaaaaaagaatctttttcac |
1875411 |
T |
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| Q |
317 |
tctactagtcttcnnnnnnncaccactttcttcactgttacaacacctatg |
367 |
Q |
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|||||| ||| || |||||||||||||||| |||||||||||||| |
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| T |
1875410 |
tctacttgtcctctttttttcaccactttcttcactattacaacacctatg |
1875360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 30 - 311
Target Start/End: Complemental strand, 1808093 - 1807812
Alignment:
| Q |
30 |
ccaactgtcactgaaagtgaagtgactgaaaagtccttttcaggaaacaaatcctttgacaacttacaaacagctatcacagagttcaagattgtcaaag |
129 |
Q |
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| T |
1808093 |
ccaactgtcactgaaattgatgtaactgaaaattccctttcagggaaaagatctgttgataatttacaaacagctatcactgagttcaacattgacaatg |
1807994 |
T |
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| Q |
130 |
gaagttgaggaattgtacctttgataaaacctttcttccaagcatgtttagtgaatttcaccacttctattgaagagggtccaaacttaatttcatgcac |
229 |
Q |
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||||||| ||||||| |||||| |||||||||||||||||| | |||||||||||||| ||||||||| |||||||||||| |||||||||||||| |
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| T |
1807993 |
gaagttgtggaattgcacctttaataaaacctttcttccaattttctttagtgaatttcattacttctattttagagggtccaaatttaatttcatgcac |
1807894 |
T |
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| Q |
230 |
cacattaggcctttttatgaatgccaaaataacacctaaaacaaagattacaaaagcagaaggaagtgaaaaaacaatcttt |
311 |
Q |
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|| | | ||| |||| || |||||| | || || ||||||| || ||||||||||||||||||||||| ||||||| |
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| T |
1807893 |
aacttcacttcttcttataaaaaccaaaactattcccaatacaaagactataaaagcagaaggaagtgaaaaaataatcttt |
1807812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 15 - 320
Target Start/End: Original strand, 25798104 - 25798409
Alignment:
| Q |
15 |
atcaaattcatcaacccaactgtcactgaaagtgaagtgactgaaaagtccttttcaggaaacaaatcctttgacaacttacaaacagctatcacagagt |
114 |
Q |
| |
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||||||||||| | |||||||||||||||| |||||| |||||||| |||||||| ||||| | ||| |||| ||||||||||||||||| ||||||| |
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| T |
25798104 |
atcaaattcattagtccaactgtcactgaaattgaagtaactgaaaattccttttctggaaaaagatctgttgataacttacaaacagctatgacagagt |
25798203 |
T |
|
| Q |
115 |
tcaagattgtcaaaggaagttgaggaattgtacctttgataaaacctttcttccaagcatgtttagtgaatttcaccacttctattgaagagggtccaaa |
214 |
Q |
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|||| |||| ||| |||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
25798204 |
tcaaaattgacaatggaagttgaggaattgcacctttgacaaaacctttcttccatgcatgtttagtgaatttcaccaattctattgaagttggtccaaa |
25798303 |
T |
|
| Q |
215 |
cttaatttcatgcaccacattaggcctttttatgaatgccaaaataacacctaaaacaaagattacaaaagcagaaggaagtgaaaaaacaatctttttc |
314 |
Q |
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|||||||||| || || | | | || |||| || |||||| || || || ||||||| |||||| ||||||||||||||||||| ||||||| || |
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| T |
25798304 |
tttaatttcattgacaacttcatgttttcttataaaaaccaaaacaatccccaacacaaagactacaaatgcagaaggaagtgaaaaaataatctttctc |
25798403 |
T |
|
| Q |
315 |
actcta |
320 |
Q |
| |
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| |||| |
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| T |
25798404 |
aatcta |
25798409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 20 - 313
Target Start/End: Original strand, 49993266 - 49993559
Alignment:
| Q |
20 |
attcatcaacccaactgtcactgaaagtgaagtgactgaaaagtccttttcaggaaacaaatcctttgacaacttacaaacagctatcacagagttcaag |
119 |
Q |
| |
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|||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || | || |||||||||||||| |||||||| |
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| T |
49993266 |
attcattaacccaactgtcactgaaagtgaagttactgaaaagtccttggttggaaataaatcagaggatagtttgcaaacagctatcaccgagttcaaa |
49993365 |
T |
|
| Q |
120 |
attgtcaaaggaagttgaggaattgtacctttgataaaacctttcttccaagcatgtttagtgaatttcaccacttctattgaagagggtccaaacttaa |
219 |
Q |
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|||| ||| || ||||| ||||| ||||| || |||||||||| ||||| |||||||||| |||||||| | ||||| ||| |||||||| |||| |
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| T |
49993366 |
attgacaagggtagttgtggaatagtaccctttataaaaccttgtttccatgcatgtttagaaaatttcactaactctatattagaaggtccaaatttaa |
49993465 |
T |
|
| Q |
220 |
tttcatgcaccacattaggcctttttatgaatgccaaaataacacctaaaacaaagattacaaaagcagaaggaagtgaaaaaacaatcttttt |
313 |
Q |
| |
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||||||| | ||||||||||||| |||| || ||||||| ||||| |||||||| | || |||||||||||| |||||||||||||||||||| |
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| T |
49993466 |
tttcatgtatcacattaggccttcttataaaacccaaaatcacacccaaaacaaatactataaaagcagaaggtagtgaaaaaacaatcttttt |
49993559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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