View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2580_high_16 (Length: 373)
Name: NF2580_high_16
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2580_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 83 - 309
Target Start/End: Original strand, 44211843 - 44212062
Alignment:
| Q |
83 |
gaaccattaattagttttga---atattttcttaaaaagattcttatattcatggatatatagggtggcatggaaatgttgagcaacgtaccagaggaat |
179 |
Q |
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| T |
44211843 |
gaaccattaattagtttttattaatattttcttaaaaagattcttatattcatggatatatagggtggcatggaaatgttgagcaacgtaccagaggaat |
44211942 |
T |
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| Q |
180 |
agcaatggctacaactacaacaacagctccaacagttgaacagggcatgagccgttgaagtgagtgaagaagatccataattcattcatgcaattgtgta |
279 |
Q |
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| T |
44211943 |
agcaatggctacaactacaacaacagctccaacagttgaacatggcatgagccgttgaagtgagtgaaga---tccataattcat----gcaattgtgtt |
44212035 |
T |
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| Q |
280 |
aaattcataattaatcttcgttttgcagcc |
309 |
Q |
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| T |
44212036 |
---ttcataattaatcttcgttttgcagcc |
44212062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 309 - 356
Target Start/End: Original strand, 44212557 - 44212604
Alignment:
| Q |
309 |
cgaataagttaagcttcattttatcttaagtctctgtaaactcaaaac |
356 |
Q |
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| T |
44212557 |
cgaataagttaagcttcattttatcttaagtctctgtaaactcaaaac |
44212604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 44211776 - 44211825
Alignment:
| Q |
10 |
aagaatatcgtgaacttgagaaacgtggatttaacatggtcattggtatg |
59 |
Q |
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| T |
44211776 |
aagaatatcgtgaacttgagaaccgtggatttaacatggtcattggtatg |
44211825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 139 - 249
Target Start/End: Original strand, 6496301 - 6496408
Alignment:
| Q |
139 |
atagggtggcatggaaatgttgagcaacgtaccagaggaatagcaatggctacaactacaacaacagctccaacagttgaacagggcatgagccgttgaa |
238 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||| |
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| T |
6496301 |
atagggtggcatggaaatgttgagcaacggactagaggaatagcaatggctacaact---acaacagctccagcagttgaacagggcatgagtcgttgaa |
6496397 |
T |
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| Q |
239 |
gtgagtgaaga |
249 |
Q |
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| T |
6496398 |
gtgagtgaaga |
6496408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 6496149 - 6496198
Alignment:
| Q |
10 |
aagaatatcgtgaacttgagaaacgtggatttaacatggtcattggtatg |
59 |
Q |
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||||||||||||| ||||| || ||||||||||||||||||||||||||| |
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| T |
6496149 |
aagaatatcgtgagcttgaaaaccgtggatttaacatggtcattggtatg |
6496198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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