View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2580_high_19 (Length: 354)
Name: NF2580_high_19
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2580_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 327
Target Start/End: Complemental strand, 5385016 - 5384697
Alignment:
| Q |
8 |
cgaagaatattggaggaattatagtcgtaggttctgcgaacatttttgttgatgttgatctgtaatgagtaaaagatatacatgtatggacaagattcag |
107 |
Q |
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| T |
5385016 |
cgaacaatactggaggaattatagtcgtaggttctgcgaacatttttgttgatgttgatctgtaatgagtaaaagatatacatgtatggacaagattcag |
5384917 |
T |
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| Q |
108 |
accaagttgtcctcaggataaagtgtgatgttacattgtttacataagaacttgccaaaacataacagagaaacaagacactcacatgacatgtttctca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5384916 |
accaagttgtcctcaggataaagtgtgatgttacattgtttacataagaacttgccaaaacataacagagaaacaagacactcacatgacatgtttctca |
5384817 |
T |
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| Q |
208 |
attgtattactactatttatgtctcaatcgcccagccctgtcatcgtcatccaaccaacataatgttttttatacataaccaatgaagtctcttttacaa |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5384816 |
attgtattactactatttatgtctcaatcgcccagccctgtcatcatcatccaaccaacaaaatgttttttatacataaccaatgaagtctcttttacaa |
5384717 |
T |
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| Q |
308 |
gctacagaaatcaagaattc |
327 |
Q |
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|||||||||||||||||||| |
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| T |
5384716 |
gctacagaaatcaagaattc |
5384697 |
T |
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