View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2580_high_20 (Length: 353)
Name: NF2580_high_20
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2580_high_20 |
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| [»] scaffold0667 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 9359010 - 9358801
Alignment:
| Q |
10 |
cttgattgttcctcaccacttcatgaatctgagggcacaagttagtatataagtaatgaaataaaatcctttaagtttttcttaacttgtacacttagaa |
109 |
Q |
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| T |
9359010 |
cttgagtgttcttcaccacttcatgaatctgagggcacaagttagtatataagtaatgaaataaaatcctttaagttttccttaatttatacac------ |
9358917 |
T |
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| Q |
110 |
attagaatacaagttgttttaatgacacaaattaacatttttcaatgtcatatggtcttnnnnnnnntccttacgttttcttcctttcactttcacttct |
209 |
Q |
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| T |
9358916 |
-ttagagtacaagttatcctaatgacacaaattaacatttttcaatgtcatatggtcttaaaaaaaatccttacgt--------tttcactttcacttct |
9358826 |
T |
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| Q |
210 |
accgaacaatcaaataatcatatca |
234 |
Q |
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| T |
9358825 |
accaaacaatcaaataatcatatca |
9358801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 5879 - 5820
Alignment:
| Q |
18 |
ttcctcaccacttcatgaatctga-gggcacaagttagtatataagtaatgaaataaaat |
76 |
Q |
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| T |
5879 |
ttcctcaccacttcatgaatctgaggggcacaagttagaaaataagtaaagaaataaaat |
5820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 5743 - 5697
Alignment:
| Q |
184 |
gttttcttcctttcactttcacttctaccgaacaatcaaataatcat |
230 |
Q |
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| T |
5743 |
gttttcttcctttcaccttcacttctaccaaacaaccaaataatcat |
5697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 31302136 - 31302096
Alignment:
| Q |
190 |
ttcctttcactttcacttctaccgaacaatcaaataatcat |
230 |
Q |
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| T |
31302136 |
ttccttttactttaacttctaccaaacaatcaaataatcat |
31302096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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