View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2580_high_24 (Length: 333)
Name: NF2580_high_24
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2580_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 25 - 167
Target Start/End: Original strand, 19300341 - 19300483
Alignment:
| Q |
25 |
gcaggagcagcatgaacatgagcagcagcagctggtctaatcacaagagtgttatcatcatttcctccaataaaatgggaccttttgtgaccccctaaag |
124 |
Q |
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| T |
19300341 |
gcaggagcagcatgagcatgagcagcagcagctggtctaatcacaagagtgttatcatcatttcctccaataaaatgggatcttttgtgaccccctaaag |
19300440 |
T |
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| Q |
125 |
cttgtcctgacttgaaaatcttgttacaaattggacattcatg |
167 |
Q |
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| T |
19300441 |
cttgtcctgacttgaaaatcttgttgcaaattggacattcatg |
19300483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 238 - 333
Target Start/End: Original strand, 19300554 - 19300649
Alignment:
| Q |
238 |
atgttcttattgctttgtgcctttggtgcaggataagaatcactttctgagctgttttcatcactctcataagctgaatcttcagaataactttct |
333 |
Q |
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| T |
19300554 |
atgttcttattgctttgtgcctttggagcaggataagaatcactttctgagctgttttcatcactctcataagctgaatcttcagaataactttct |
19300649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 19300308 - 19300344
Alignment:
| Q |
16 |
gcaggaggtgcaggagcagcatgaacatgagcagcag |
52 |
Q |
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| T |
19300308 |
gcaggaggtgcaggagcagcatgagcatgagcagcag |
19300344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 166
Target Start/End: Original strand, 32265834 - 32265955
Alignment:
| Q |
45 |
agcagcagcagctggtctaatcacaagagtgttatcatcatttcctccaataaaatgggaccttttgtgaccccctaaagcttgtcctgacttgaaaatc |
144 |
Q |
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| T |
32265834 |
agcagcagcagcttgtttgatcacaaaagtgttctcttcagatcctccaacaaaatgtgatcttttatgtcctcctaatgcttgtcctgacctgaaaatt |
32265933 |
T |
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| Q |
145 |
ttgttacaaattggacattcat |
166 |
Q |
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|||| |||||||||||||||| |
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| T |
32265934 |
ttgtagcaaattggacattcat |
32265955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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