View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2580_high_3 (Length: 573)

Name: NF2580_high_3
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2580_high_3
NF2580_high_3
[»] chr2 (4 HSPs)
chr2 (183-573)||(32629343-32629727)
chr2 (1-74)||(32628646-32628719)
chr2 (1-47)||(10251193-10251239)
chr2 (6-47)||(34010568-34010609)
[»] chr7 (2 HSPs)
chr7 (1-74)||(44614270-44614343)
chr7 (8-72)||(38918356-38918420)
[»] chr6 (2 HSPs)
chr6 (1-74)||(31533180-31533253)
chr6 (6-47)||(20397483-20397524)
[»] chr1 (4 HSPs)
chr1 (1-72)||(1094246-1094317)
chr1 (24-70)||(47939118-47939164)
chr1 (6-72)||(9039725-9039795)
chr1 (19-67)||(24491024-24491072)
[»] chr5 (2 HSPs)
chr5 (1-74)||(15507403-15507476)
chr5 (1-69)||(11877058-11877126)
[»] chr8 (1 HSPs)
chr8 (8-67)||(38153446-38153505)
[»] chr4 (1 HSPs)
chr4 (1-70)||(28701478-28701547)
[»] scaffold0092 (1 HSPs)
scaffold0092 (9-74)||(44851-44917)


Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 183 - 573
Target Start/End: Original strand, 32629343 - 32629727
Alignment:
Q  183 catgctgccctaatgaagtctcttgagtttttaattgaggtatttacttctacgaacacacacaaattagaaaggagaaaaagatagagactattatcta 282  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||  |||||     |||| |||||||||||||| ||    
T  32629343 catgctgccctaatgaagcctcttgagtttt-aattgaggtatttacttctacgaacacacaaaaaggagaaa-----aaaaaatagagactattatata 32629436  T
Q  283 agtcaacaacaggttaaagtttaaattgagggtgtgtgttggaaattatgaagacctagaaaggaacaaagacaactaaaatgtggcttaaactttctga 382  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32629437 agtcaccaacaggttaaagtttaaattgagggtgtgtgttggaaattatgaagacctagaaaggaacaaagacaactaaaatgtggcttaaactttctga 32629536  T
Q  383 acgtgtgtccccacacttaggacatctgccataatccaaatgttaagtcaatagtcaatactaaattacttctctaatgtgaatattggatcagttaaat 482  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32629537 acgtgtgtccccacacttaggacatctgccataatccaactgttaagtcaatagtcaatactaaattacttctctaatgtgcatattggatcagttaaat 32629636  T
Q  483 aaatcatcgtgcgacgtgctttttattttatcattttaacataaaatataagaaattcatttcacatcttgccatgttgacctaatgaaaa 573  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32629637 aaatcatcgtgcgacgtgctttttattttatcattttaacataaaatataagatattcatttcacatcttgccatgttgacctaatgaaaa 32629727  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 32628646 - 32628719
Alignment:
Q  1 aatcgtctatttaagttgtaaataacataaaaaatattcattgttattaagtaaaagtaagtttgtatgggaag 74  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32628646 aatcgtctatttaagttgtaaataacataaaaaatattcgttgttattaagtaaaagtaagtttgtatgggaag 32628719  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 10251239 - 10251193
Alignment:
Q  1 aatcgtctatttaagttgtaaataacataaaaaatattcattgttat 47  Q
    |||| ||| ||||||||||||||||||||||||||| ||||| ||||    
T  10251239 aatcatctgtttaagttgtaaataacataaaaaatagtcattcttat 10251193  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 34010609 - 34010568
Alignment:
Q  6 tctatttaagttgtaaataacataaaaaatattcattgttat 47  Q
    |||| |||||||||||||||||||||||||| ||||| ||||    
T  34010609 tctacttaagttgtaaataacataaaaaatagtcattcttat 34010568  T

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Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 44614343 - 44614270
Alignment:
Q  1 aatcgtctatttaagttgtaaataacataaaaaatattcattgttattaagtaaaagtaagtttgtatgggaag 74  Q
    |||| ||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||    
T  44614343 aatcatctatttaagttgtaaataacataaaaaaaagtcattcttattaagtaaaagtaagtttgtatgggaag 44614270  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 38918356 - 38918420
Alignment:
Q  8 tatttaagttgtaaataacataaaaaatattcattgttattaagtaaaagtaagtttgtatggga 72  Q
    |||||||| | |||||||||| ||||||| | ||| ||||||||||||| | |||||||| ||||    
T  38918356 tatttaagctctaaataacatcaaaaatagttattcttattaagtaaaattgagtttgtacggga 38918420  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 31533180 - 31533253
Alignment:
Q  1 aatcgtctatttaagttgtaaataacataaaaaatattcattgttattaagtaaaagtaagtttgtatgggaag 74  Q
    |||| |||||||||||||| ||||||||||||||||  |||| |||||||||||||||||||||||||| ||||    
T  31533180 aatcatctatttaagttgtgaataacataaaaaatagccattcttattaagtaaaagtaagtttgtatgagaag 31533253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 20397524 - 20397483
Alignment:
Q  6 tctatttaagttgtaaataacataaaaaatattcattgttat 47  Q
    |||||||||||| |||||||||||||||||| ||||| ||||    
T  20397524 tctatttaagttttaaataacataaaaaatagtcatttttat 20397483  T

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Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 1094246 - 1094317
Alignment:
Q  1 aatcgtctatttaagttgtaaataacataaaaaatattcattgttattaagtaaaagtaagtttgtatggga 72  Q
    |||| ||||||| ||||||||||||||||||||||  ||||| ||||||| |||||||||||||||||||||    
T  1094246 aatcatctattttagttgtaaataacataaaaaatgatcattcttattaaataaaagtaagtttgtatggga 1094317  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 47939164 - 47939118
Alignment:
Q  24 aacataaaaaatattcattgttattaagtaaaagtaagtttgtatgg 70  Q
    ||||||||||||| ||||| ||||||||||||||||| |||||||||    
T  47939164 aacataaaaaatagtcattcttattaagtaaaagtaaatttgtatgg 47939118  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 9039725 - 9039795
Alignment:
Q  6 tctatttaagttgtaaataacataaaaaata----ttcattgttattaagtaaaagtaagtttgtatggga 72  Q
    ||||||||||||||||||||||| |||||||     ||||| ||||||||||||| | |||||||||||||    
T  9039725 tctatttaagttgtaaataacattaaaaataattcgtcattcttattaagtaaaaattagtttgtatggga 9039795  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 24491024 - 24491072
Alignment:
Q  19 taaataacataaaaaatattcattgttattaagtaaaagtaagtttgta 67  Q
    |||||||||||||||||| ||||| ||||| | |||||||||| |||||    
T  24491024 taaataacataaaaaatagtcattcttatttaataaaagtaagcttgta 24491072  T

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Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 15507476 - 15507403
Alignment:
Q  1 aatcgtctatttaagttgtaaataacataaaaaatattcattgttattaagtaaaagtaagtttgtatgggaag 74  Q
    |||| ||||||||||  ||||||||||| ||||||| ||||| ||||||||||||| |||||||||||||||||    
T  15507476 aatcatctatttaaggcgtaaataacatcaaaaatagtcatttttattaagtaaaattaagtttgtatgggaag 15507403  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 11877126 - 11877058
Alignment:
Q  1 aatcgtctatttaagttgtaaataacataaaaaatattcattgttattaagtaaaagtaagtttgtatg 69  Q
    |||| |||||||||||| ||||| | |||||||||| ||||| ||||||||||||||||| ||||||||    
T  11877126 aatcatctatttaagttataaattaaataaaaaatagtcattcttattaagtaaaagtaaatttgtatg 11877058  T

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Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 38153446 - 38153505
Alignment:
Q  8 tatttaagttgtaaataacataaaaaatattcattgttattaagtaaaagtaagtttgta 67  Q
    |||||||| |||||||||||||||||||| ||||| |||||||||||| |||||||||||    
T  38153446 tatttaaggtgtaaataacataaaaaatagtcattcttattaagtaaatgtaagtttgta 38153505  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 28701547 - 28701478
Alignment:
Q  1 aatcgtctatttaagttgtaaataacataaaaaatattcattgttattaagtaaaagtaagtttgtatgg 70  Q
    |||| ||||||||||||||||||||||||||||||| ||||    ||||||||||| |||||||||||||    
T  28701547 aatcatctatttaagttgtaaataacataaaaaatagtcatataaattaagtaaaaataagtttgtatgg 28701478  T

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Target: scaffold0092 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 44851 - 44917
Alignment:
Q  9 atttaagttgtaaataacataaaaaatattcattgttattaagt-aaaagtaagtttgtatgggaag 74  Q
    ||||||| |||||||||||| |||| || ||||| |||| |||| ||||||||||||||||||||||    
T  44851 atttaaggtgtaaataacatcaaaagtagtcattcttatcaagtaaaaagtaagtttgtatgggaag 44917  T

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