View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2580_high_32 (Length: 283)

Name: NF2580_high_32
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2580_high_32
NF2580_high_32
[»] chr8 (5 HSPs)
chr8 (10-183)||(7094601-7094774)
chr8 (10-152)||(7098334-7098476)
chr8 (250-283)||(7094841-7094874)
chr8 (104-152)||(29821255-29821301)
chr8 (251-283)||(29821121-29821153)
[»] chr3 (3 HSPs)
chr3 (10-183)||(8377027-8377200)
chr3 (87-152)||(11035898-11035963)
chr3 (250-283)||(8376927-8376960)
[»] chr1 (4 HSPs)
chr1 (10-183)||(22362254-22362427)
chr1 (10-152)||(41314715-41314857)
chr1 (77-152)||(33885575-33885650)
chr1 (77-152)||(33958602-33958677)
[»] chr5 (4 HSPs)
chr5 (10-152)||(37627850-37627992)
chr5 (10-152)||(37806973-37807121)
chr5 (250-283)||(37807222-37807255)
chr5 (255-283)||(37628097-37628125)
[»] chr7 (7 HSPs)
chr7 (10-143)||(19633376-19633509)
chr7 (10-152)||(1609285-1609431)
chr7 (10-152)||(2186619-2186765)
chr7 (77-152)||(21270495-21270567)
chr7 (250-283)||(19633621-19633654)
chr7 (77-152)||(48189367-48189436)
chr7 (255-283)||(28386652-28386680)
[»] scaffold0627 (1 HSPs)
scaffold0627 (88-143)||(3342-3397)
[»] chr2 (1 HSPs)
chr2 (104-152)||(19214968-19215016)
[»] chr4 (1 HSPs)
chr4 (251-283)||(15424782-15424814)
[»] scaffold0042 (3 HSPs)
scaffold0042 (88-143)||(6427-6481)
scaffold0042 (251-280)||(6590-6619)
scaffold0042 (251-280)||(14002-14031)


Alignment Details
Target: chr8 (Bit Score: 146; Significance: 6e-77; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 10 - 183
Target Start/End: Original strand, 7094601 - 7094774
Alignment:
Q  10 attatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacacataaaaatagtaggaataaatagttatagggtacacta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7094601 attatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacacataaaaatagtaggaataaatagttatagggtacacta 7094700  T
Q  110 tttaataattaatataatgaattttggctatatactttgaaagnnnnnnnncaaaatgatatattatcactcaa 183  Q
    |||||||||||||||||||||||||||||||||||||||||||        |||||| ||||||||||||||||    
T  7094701 tttaataattaatataatgaattttggctatatactttgaaagaaaaaaaacaaaataatatattatcactcaa 7094774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 10 - 152
Target Start/End: Original strand, 7098334 - 7098476
Alignment:
Q  10 attatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacacataaaaatagtaggaataaatagttatagggtacacta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098334 attatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacacataaaaatagtaggaataaatagttatagggtacacta 7098433  T
Q  110 tttaataattaatataatgaattttggctatatactttgaaag 152  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  7098434 tttaataattaatataatgaattttggctatatactttgaaag 7098476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 250 - 283
Target Start/End: Original strand, 7094841 - 7094874
Alignment:
Q  250 ccgggatcttacattctacccacctaaaatagtt 283  Q
    ||||||||||||||||||||||||||||||||||    
T  7094841 ccgggatcttacattctacccacctaaaatagtt 7094874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 29821301 - 29821255
Alignment:
Q  104 acactatttaataattaatataatgaattttggctatatactttgaaag 152  Q
    |||||||||||  |||| |||||||||||||||||||||| ||||||||    
T  29821301 acactatttaa--attagtataatgaattttggctatataatttgaaag 29821255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 283
Target Start/End: Complemental strand, 29821153 - 29821121
Alignment:
Q  251 cgggatcttacattctacccacctaaaatagtt 283  Q
    ||||||||||||||||||| |||||||||||||    
T  29821153 cgggatcttacattctacctacctaaaatagtt 29821121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 6e-77; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 10 - 183
Target Start/End: Complemental strand, 8377200 - 8377027
Alignment:
Q  10 attatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacacataaaaatagtaggaataaatagttatagggtacacta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8377200 attatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacacataaaaatagtaggaataaatagttatagggtacacta 8377101  T
Q  110 tttaataattaatataatgaattttggctatatactttgaaagnnnnnnnncaaaatgatatattatcactcaa 183  Q
    |||||||||||||||||||||||||||||||||||||||||||        |||||| ||||||||||||||||    
T  8377100 tttaataattaatataatgaattttggctatatactttgaaagaaaaaaaacaaaataatatattatcactcaa 8377027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 11035898 - 11035963
Alignment:
Q  87 ataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag 152  Q
    ||||||||||||||| |||||||| ||||||||| | ||||| |||||||||||||| ||||||||    
T  11035898 ataaatagttataggatacactatataataattagtctaatggattttggctatataatttgaaag 11035963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 8376960 - 8376927
Alignment:
Q  250 ccgggatcttacattctacccacctaaaatagtt 283  Q
    ||||||||||||||||||||||||||||||||||    
T  8376960 ccgggatcttacattctacccacctaaaatagtt 8376927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 146; Significance: 6e-77; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 10 - 183
Target Start/End: Complemental strand, 22362427 - 22362254
Alignment:
Q  10 attatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacacataaaaatagtaggaataaatagttatagggtacacta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22362427 attatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacacataaaaatagtaggaataaatagttatagggtacacta 22362328  T
Q  110 tttaataattaatataatgaattttggctatatactttgaaagnnnnnnnncaaaatgatatattatcactcaa 183  Q
    |||||||||||||||||||||||||||||||||||||||||||        |||||| ||||||||||||||||    
T  22362327 tttaataattaatataatgaattttggctatatactttgaaagaaaaaaaacaaaataatatattatcactcaa 22362254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 10 - 152
Target Start/End: Original strand, 41314715 - 41314857
Alignment:
Q  10 attatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacacataaaaatagtaggaataaatagttatagggtacacta 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  41314715 attatacttaattaaattaatactaacatgagataaagatgagaaaatctacacgtgcacacataaaaatagtaggaataaatagttatagggtacccca 41314814  T
Q  110 tttaataattaatataatgaattttggctatatactttgaaag 152  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  41314815 tttaataattaatataatgaattttggctatatactttgaaag 41314857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 33885650 - 33885575
Alignment:
Q  77 aatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag 152  Q
    |||| |||| ||||||| |||||||||||||||| |||||| || || |||| |||||||||||||| ||||||||    
T  33885650 aataataggcataaataattatagggtacactatctaataaatagtacaatggattttggctatataatttgaaag 33885575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 33958602 - 33958677
Alignment:
Q  77 aatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag 152  Q
    |||| |||| ||||||| |||||||||||||||| |||||| || || |||| |||||||||||||| ||||||||    
T  33958602 aataataggcataaataattatagggtacactatctaataaatagtacaatggattttggctatataatttgaaag 33958677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 10 - 152
Target Start/End: Original strand, 37627850 - 37627992
Alignment:
Q  10 attatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacacataaaaatagtaggaataaatagttatagggtacacta 109  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37627850 attatacttaattaaattgatactaacatgagataaagatgaggaattctacacgtgcacacataaaaatagtaggaataaatagttatagggtacacta 37627949  T
Q  110 tttaataattaatataatgaattttggctatatactttgaaag 152  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  37627950 tttaataattaatataatgaattttggctatatactttgaaag 37627992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 152
Target Start/End: Original strand, 37806973 - 37807121
Alignment:
Q  10 attatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacacataa------aaatagtaggaataaatagttatagggt 103  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||      |||||||||||||||||||||||||| |    
T  37806973 attatacttaattaaattgatactaacatgagataaagatgaggaattctacacgtgcacacataaaaataaaaatagtaggaataaatagttataggtt 37807072  T
Q  104 acactatttaataattaatataatgaattttggctatatactttgaaag 152  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37807073 acactatttaataattaatataatgaattttggctatatacttcgaaag 37807121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 250 - 283
Target Start/End: Original strand, 37807222 - 37807255
Alignment:
Q  250 ccgggatcttacattctacccacctaaaatagtt 283  Q
    ||||||||||||||||||||||||||||||||||    
T  37807222 ccgggatcttacattctacccacctaaaatagtt 37807255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 283
Target Start/End: Original strand, 37628097 - 37628125
Alignment:
Q  255 atcttacattctacccacctaaaatagtt 283  Q
    |||||||||||||||||||||||||||||    
T  37628097 atcttacattctacccacctaaaatagtt 37628125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 143
Target Start/End: Original strand, 19633376 - 19633509
Alignment:
Q  10 attatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacacataaaaatagtaggaataaatagttatagggtacacta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19633376 attatacttaattaaattaatactaacatgagataaagatgagcaattctacacgtgcacacataaaaatagtaggaataaatagttatagggtacacta 19633475  T
Q  110 tttaataattaatataatgaattttggctatata 143  Q
    ||||||||||||||||||||||||||||||||||    
T  19633476 tttaataattaatataatgaattttggctatata 19633509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 10 - 152
Target Start/End: Original strand, 1609285 - 1609431
Alignment:
Q  10 attatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacacataaaaatagtaggaataaa----tagttatagggtac 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    ||||||||||||||    
T  1609285 attatacttaattaaattaatactaacatgagataaagatgaggaattctacacgtgcacacataaaaatagtaggaataaatagttagttatagggtac 1609384  T
Q  106 actatttaataattaatataatgaattttggctatatactttgaaag 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  1609385 actatttaataattaatataatgaattttggctatatactttgaaag 1609431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 10 - 152
Target Start/End: Complemental strand, 2186765 - 2186619
Alignment:
Q  10 attatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacacataaaaatagtaggaataaata----gttatagggtac 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    ||||||||||||    
T  2186765 attatacttaattaaattaatactaacatgagataaagatgaggaattccacacgtgcacacataaaaatagtaggaataaatagttagttatagggtac 2186666  T
Q  106 actatttaataattaatataatgaattttggctatatactttgaaag 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2186665 actatttaataattaatataatgaattttggctatatactttgaaag 2186619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 21270495 - 21270567
Alignment:
Q  77 aatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag 152  Q
    |||| |||| |||||||||||||||||||| |||||||||||   | ||||| |||||||||||||||||||||||    
T  21270495 aataataggcataaatagttatagggtacattatttaataat---tgtaatggattttggctatatactttgaaag 21270567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 250 - 283
Target Start/End: Original strand, 19633621 - 19633654
Alignment:
Q  250 ccgggatcttacattctacccacctaaaatagtt 283  Q
    ||||||||||||||||||||||||||||||||||    
T  19633621 ccgggatcttacattctacccacctaaaatagtt 19633654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 48189367 - 48189436
Alignment:
Q  77 aatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag 152  Q
    |||| |||| |||||||||||||||||||||||||||||      | ||||  |||||||||||||||||||||||    
T  48189367 aataataggcataaatagttatagggtacactatttaat------tgtaatagattttggctatatactttgaaag 48189436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 283
Target Start/End: Complemental strand, 28386680 - 28386652
Alignment:
Q  255 atcttacattctacccacctaaaatagtt 283  Q
    |||||||||||||||||||||||||||||    
T  28386680 atcttacattctacccacctaaaatagtt 28386652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 3342 - 3397
Alignment:
Q  88 taaatagttatagggtacactatttaataattaatataatgaattttggctatata 143  Q
    |||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  3342 taaatagttataaggtacactatttaataattagtataatggattttggctatata 3397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 19215016 - 19214968
Alignment:
Q  104 acactatttaataattaatataatgaattttggctatatactttgaaag 152  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  19215016 acactatttaataattagtataatgaattttggctatataatttgaaag 19214968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 283
Target Start/End: Complemental strand, 15424814 - 15424782
Alignment:
Q  251 cgggatcttacattctacccacctaaaatagtt 283  Q
    |||||||||||||||||||||||||||||||||    
T  15424814 cgggatcttacattctacccacctaaaatagtt 15424782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 6427 - 6481
Alignment:
Q  88 taaatagttatagggtacactatttaataattaatataatgaattttggctatata 143  Q
    |||||||||||| ||||||||||| |||||||| | ||||| ||||||||||||||    
T  6427 taaatagttataaggtacactatt-aataattagtgtaatggattttggctatata 6481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 280
Target Start/End: Original strand, 6590 - 6619
Alignment:
Q  251 cgggatcttacattctacccacctaaaata 280  Q
    ||||||||||||||||||||||||||||||    
T  6590 cgggatcttacattctacccacctaaaata 6619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 280
Target Start/End: Original strand, 14002 - 14031
Alignment:
Q  251 cgggatcttacattctacccacctaaaata 280  Q
    ||||||||||||||||||||||||||||||    
T  14002 cgggatcttacattctacccacctaaaata 14031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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