View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2580_high_34 (Length: 268)

Name: NF2580_high_34
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2580_high_34
NF2580_high_34
[»] chr4 (4 HSPs)
chr4 (35-268)||(35162709-35162942)
chr4 (27-267)||(35155690-35155930)
chr4 (161-268)||(15556283-15556390)
chr4 (31-119)||(15556438-15556526)
[»] chr8 (3 HSPs)
chr8 (7-268)||(9692311-9692572)
chr8 (7-268)||(9675289-9675550)
chr8 (185-265)||(21463961-21464041)
[»] chr3 (26 HSPs)
chr3 (173-268)||(47397067-47397162)
chr3 (31-118)||(46236395-46236482)
chr3 (28-119)||(47413798-47413889)
chr3 (159-236)||(46526167-46526244)
chr3 (161-236)||(46480093-46480168)
chr3 (17-122)||(16025904-16026009)
chr3 (156-236)||(46498251-46498331)
chr3 (17-119)||(5156674-5156776)
chr3 (159-222)||(46532224-46532287)
chr3 (161-268)||(46539268-46539375)
chr3 (182-268)||(16025755-16025841)
chr3 (160-222)||(46236537-46236599)
chr3 (18-119)||(46480222-46480323)
chr3 (158-222)||(5156565-5156629)
chr3 (182-268)||(5160545-5160634)
chr3 (161-268)||(46544743-46544850)
chr3 (17-110)||(5160715-5160808)
chr3 (156-213)||(46491029-46491086)
chr3 (182-222)||(4581156-4581196)
chr3 (182-222)||(4613613-4613653)
chr3 (35-119)||(51944319-51944403)
chr3 (52-119)||(46506879-46506946)
chr3 (161-219)||(46484360-46484418)
chr3 (185-267)||(46548774-46548856)
chr3 (182-216)||(51944216-51944250)
chr3 (180-222)||(53390989-53391031)
[»] chr2 (5 HSPs)
chr2 (194-268)||(20144900-20144974)
chr2 (17-96)||(20168617-20168696)
chr2 (17-96)||(20359588-20359667)
chr2 (194-268)||(20168800-20168874)
chr2 (17-96)||(20145078-20145157)
[»] chr7 (4 HSPs)
chr7 (182-268)||(16722421-16722507)
chr7 (182-268)||(17699435-17699521)
chr7 (182-268)||(17708544-17708630)
chr7 (182-268)||(17736198-17736284)


Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 35 - 268
Target Start/End: Complemental strand, 35162942 - 35162709
Alignment:
Q  35 ttgagcacttgtcccgcaaagaggattgtttgggtcgaatcttctctaactagaaataagaaaggatgatcagctataaagtctactccggttggaatac 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35162942 ttgagcacttgtcccgcaaagaggattgtttgggtcgaatcttctctaattagaaataagaaaggatgatcagctataaagtctactccggttggaatac 35162843  T
Q  135 acttggccataagtgcacagctggctgcagcagctacggtgcctttctcatttacttcaatgaaagacttgtgaaatatgttggaaactaaaaggttttg 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35162842 acttggccataagtgcacagctggctgcagcagctacggtgcctttctcatttacttcaatgaaagacttgtgaaatatgttggaaactaaaaggttttg 35162743  T
Q  235 accttcaagcgagtccaccatttttgtcaaacct 268  Q
    ||||||||| ||||||||||||||||||||||||    
T  35162742 accttcaagtgagtccaccatttttgtcaaacct 35162709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 27 - 267
Target Start/End: Complemental strand, 35155930 - 35155690
Alignment:
Q  27 aaagaggattgagcacttgtcccgcaaagaggattgtttgggtcgaatcttctctaactagaaataagaaaggatgatcagctataaagtctactccggt 126  Q
    ||||||| |||| ||||||||| ||||||||||||||||||||| |||||||||||| || |||||||||||| ||||||||||||||||||| ||||||    
T  35155930 aaagagggttgaacacttgtccggcaaagaggattgtttgggtcaaatcttctctaattaaaaataagaaagggtgatcagctataaagtctagtccggt 35155831  T
Q  127 tggaatacacttggccataagtgcacagctggctgcagcagctacggtgcctttctcatttacttcaatgaaagacttgtgaaatatgttggaaactaaa 226  Q
    ||   ||| |  ||  |  | || |   ||||||||| |||||   |||||||| || ||||||||||| ||| |||| ||||||||||||  |||  |     
T  35155830 tgatctacccaaggtaaataatgtagtactggctgcaacagctttagtgcctttttcgtttacttcaataaaacacttctgaaatatgttgctaacggag 35155731  T
Q  227 aggttttgaccttcaagcgagtccaccatttttgtcaaacc 267  Q
    || |||||||||||||| |||||||||||||||||||||||    
T  35155730 agattttgaccttcaagagagtccaccatttttgtcaaacc 35155690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 268
Target Start/End: Complemental strand, 15556390 - 15556283
Alignment:
Q  161 gcagcagctacggtgcctttctcatttacttcaatgaaagacttgtgaaatatgttggaaactaaaaggttttgaccttcaagcgagtccaccatttttg 260  Q
    ||||||||| | |||||||  || |||||||  ||||||||||| || |||||||| ||||| || |||| ||||||  |||| |||||||||||||| |    
T  15556390 gcagcagcttcagtgccttcttcgtttacttggatgaaagacttttggaatatgttagaaacaaacaggtcttgacccgcaagtgagtccaccattttag 15556291  T
Q  261 tcaaacct 268  Q
    ||||||||    
T  15556290 tcaaacct 15556283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 15556526 - 15556438
Alignment:
Q  31 aggattgagcacttgtcccgcaaagaggattgtttgggtcgaatcttctctaactagaaataagaaaggatgatcagctataaagtcta 119  Q
    |||||| ||||| |||||  |||||||||||||   |||| |||||||||| | |||||||||||| || || ||||||| ||||||||    
T  15556526 aggattaagcacctgtccaacaaagaggattgtgccggtcaaatcttctcttattagaaataagaatgggtggtcagctacaaagtcta 15556438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 7e-58; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 7 - 268
Target Start/End: Original strand, 9692311 - 9692572
Alignment:
Q  7 gagatgttatgatcactcagaaagaggattgagcacttgtcccgcaaagaggattgtttgggtcgaatcttctctaactagaaataagaaaggatgatca 106  Q
    |||| |||| |||||| ||  |||||||||||| || ||||| ||||||| ||| ||||||||| |||||||||||| |||||||| |||||| |||||     
T  9692311 gagaagttaagatcacccaacaagaggattgagaacctgtccggcaaagatgatcgtttgggtcaaatcttctctaattagaaataggaaagggtgatcg 9692410  T
Q  107 gctataaagtctactccggttggaatacacttggccataagtgcacagctggctgcagcagctacggtgcctttctcatttacttcaatgaaagacttgt 206  Q
    ||||||||||||| ||| ||||| |||||| ||||||  | ||||    ||||   ||||||| | ||||||| ||| ||||||||||||||||||||||    
T  9692411 gctataaagtctattccagttggcatacacatggccaccactgcaatattggccttagcagcttcagtgccttcctcgtttacttcaatgaaagacttgt 9692510  T
Q  207 gaaatatgttggaaactaaaaggttttgaccttcaagcgagtccaccatttttgtcaaacct 268  Q
    ||||||||||||||||  |||||| |||||||||||| ||||||||||||||||||||||||    
T  9692511 gaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccatttttgtcaaacct 9692572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 7 - 268
Target Start/End: Original strand, 9675289 - 9675550
Alignment:
Q  7 gagatgttatgatcactcagaaagaggattgagcacttgtcccgcaaagaggattgtttgggtcgaatcttctctaactagaaataagaaaggatgatca 106  Q
    |||| |||| |||||| ||  |||||||||||| || ||||| ||||||| |||||||||||||||||||||||||| |||||||| |||||| |||||     
T  9675289 gagaagttaagatcacccaacaagaggattgagaacctgtccggcaaagatgattgtttgggtcgaatcttctctaattagaaataggaaagggtgatcg 9675388  T
Q  107 gctataaagtctactccggttggaatacacttggccataagtgcacagctggctgcagcagctacggtgcctttctcatttacttcaatgaaagacttgt 206  Q
    ||||||||||||| ||| |||||   ||||  | ||   | |  |    |||||| ||||||| | ||||||| ||||||||||||||||  ||||||||    
T  9675389 gctataaagtctattccagttggcgcacacaagacccctattttagcattggctgtagcagcttcagtgccttcctcatttacttcaatggtagacttgt 9675488  T
Q  207 gaaatatgttggaaactaaaaggttttgaccttcaagcgagtccaccatttttgtcaaacct 268  Q
    ||||||||||||||||  ||| || |||||||||||| ||||||||||||||||||||||||    
T  9675489 gaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtcaaacct 9675550  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 265
Target Start/End: Original strand, 21463961 - 21464041
Alignment:
Q  185 tttacttcaatgaaagacttgtgaaatatgttggaaactaaaaggttttgaccttcaagcgagtccaccatttttgtcaaa 265  Q
    ||||||||||| ||||||||||||||||||||||| ||  ||||||||||| |     | |||||||||||||||||||||    
T  21463961 tttacttcaataaaagacttgtgaaatatgttggacacataaaggttttgagcaattcgagagtccaccatttttgtcaaa 21464041  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 268
Target Start/End: Original strand, 47397067 - 47397162
Alignment:
Q  173 gtgcctttctcatttacttcaatgaaagacttgtgaaatatgttggaaactaaaaggttttgaccttcaagcgagtccaccatttttgtcaaacct 268  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||  | ||  |||||| ||||||||| ||||||    
T  47397067 gtgcctttctcatttacttcaatgaaatacttctgaaatatgttggaaacaaaaaggttttgacccgctagaaagtccatcatttttgttaaacct 47397162  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 46236395 - 46236482
Alignment:
Q  31 aggattgagcacttgtcccgcaaagaggattgtttgggtcgaatcttctctaactagaaataagaaaggatgatcagctataaagtct 118  Q
    |||||||||||| ||||| |||||||||||||||  ||||||| ||||||||| |||||||| |||||| |||||||||| |||||||    
T  46236395 aggattgagcacctgtccagcaaagaggattgttccggtcgaaacttctctaattagaaataggaaagggtgatcagctacaaagtct 46236482  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 28 - 119
Target Start/End: Original strand, 47413798 - 47413889
Alignment:
Q  28 aagaggattgagcacttgtcccgcaaagaggattgtttgggtcgaatcttctctaactagaaataagaaaggatgatcagctataaagtcta 119  Q
    ||||||||||||||| |||||  ||||||||||||||| ||| ||||||||||||| ||||||||||||||| || || |||| ||||||||    
T  47413798 aagaggattgagcacatgtccaacaaagaggattgtttcggttgaatcttctctaattagaaataagaaagggtggtcggctacaaagtcta 47413889  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 46526167 - 46526244
Alignment:
Q  159 ctgcagcagctacggtgcctttctcatttacttcaatgaaagacttgtgaaatatgttggaaactaaaaggttttgac 236  Q
    ||||||||||| ||||||||  ||||||||||||||||| ||||||||||||||| ||||||||  ||||||||||||    
T  46526167 ctgcagcagcttcggtgcctccctcatttacttcaatgagagacttgtgaaatattttggaaacgtaaaggttttgac 46526244  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 46480168 - 46480093
Alignment:
Q  161 gcagcagctacggtgcctttctcatttacttcaatgaaagacttgtgaaatatgttggaaactaaaaggttttgac 236  Q
    ||||||||| | |||||||  |||||||||||||||||||||||||||||||| ||||||||  ||||||||||||    
T  46480168 gcagcagcttcagtgccttcttcatttacttcaatgaaagacttgtgaaatatattggaaacacaaaggttttgac 46480093  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 16026009 - 16025904
Alignment:
Q  17 gatcactcagaaagaggattgagcacttgtcccgcaaagaggattgtttgggtcgaatcttctctaactagaaataagaaaggatgatcagctataaagt 116  Q
    |||||||||  || ||||||||| ||||| ||  ||||||||||||||| |||  |||||||||||| ||||||||||||||| || ||||||| ||| |    
T  16026009 gatcactcaacaaaaggattgagtacttgccctacaaagaggattgtttcggttaaatcttctctaattagaaataagaaagggtggtcagctacaaaat 16025910  T
Q  117 ctactc 122  Q
    ||||||    
T  16025909 ctactc 16025904  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 46498331 - 46498251
Alignment:
Q  156 tggctgcagcagctacggtgcctttctcatttacttcaatgaaagacttgtgaaatatgttggaaactaaaaggttttgac 236  Q
    |||| |||||||||  ||||||||  |||||||||||||||||||||||||| ||||| ||||||||  ||||||||||||    
T  46498331 tggccgcagcagctttggtgccttcttcatttacttcaatgaaagacttgtggaatattttggaaacataaaggttttgac 46498251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 5156776 - 5156674
Alignment:
Q  17 gatcactcagaaagaggattgagcacttgtcccgcaaagaggattgtttgggtcgaatcttctctaactagaaataagaaaggatgatcagctataaagt 116  Q
    |||||||||  ||| |||||||||||||||||  ||||||| || |||   ||||| | |||||||| ||||||||||||||| |||||||||| |||||    
T  5156776 gatcactcatcaagtggattgagcacttgtccaacaaagagaatggttccagtcgagttttctctaattagaaataagaaagggtgatcagctacaaagt 5156677  T
Q  117 cta 119  Q
    |||    
T  5156676 cta 5156674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 46532287 - 46532224
Alignment:
Q  159 ctgcagcagctacggtgcctttctcatttacttcaatgaaagacttgtgaaatatgttggaaac 222  Q
    ||||||||||| | |||||||| |||||||||||||||||||| || ||||||||||| |||||    
T  46532287 ctgcagcagcttcagtgcctttttcatttacttcaatgaaagaattttgaaatatgttagaaac 46532224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 268
Target Start/End: Complemental strand, 46539375 - 46539268
Alignment:
Q  161 gcagcagctacggtgcctttctcatttacttcaatgaaagacttgtgaaatatgttggaaactaaaaggttttgaccttcaagcgagtccaccatttttg 260  Q
    |||||||||  ||| ||||  |||||||||||||| ||||||||||| ||||  | ||||||  |||||||||||| |  | | ||||||||||||||||    
T  46539375 gcagcagctttggttccttgttcatttacttcaataaaagacttgtggaatacatcggaaacataaaggttttgacttgtaggagagtccaccatttttg 46539276  T
Q  261 tcaaacct 268  Q
    ||||||||    
T  46539275 tcaaacct 46539268  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 16025841 - 16025755
Alignment:
Q  182 tcatttacttcaatgaaagacttgtgaaatatgttggaaactaaaaggttttgaccttcaagcgagtccaccatttttgtcaaacct 268  Q
    ||||||||||| |||||||| ||||||||||||   ||||| || |||| ||||  ||||||  |||||||||||||||||||||||    
T  16025841 tcatttacttcgatgaaagatttgtgaaatatgcgagaaacaaagaggtcttgatgttcaagaaagtccaccatttttgtcaaacct 16025755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 46236537 - 46236599
Alignment:
Q  160 tgcagcagctacggtgcctttctcatttacttcaatgaaagacttgtgaaatatgttggaaac 222  Q
    ||||||| || | |||||||  |||||||||||||||||||| ||||||||||||||||||||    
T  46236537 tgcagcaacttcagtgccttcttcatttacttcaatgaaagatttgtgaaatatgttggaaac 46236599  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 46480323 - 46480222
Alignment:
Q  18 atcactcagaaagaggattgagcacttgtcccgcaaagaggattgtttgggtcgaatcttctctaactagaaataagaaaggatgatcagctataaagtc 117  Q
    ||||| ||| ||||||||||||||| |||||  |||||| |||||||  |||| | ||||||||||  | |||||||||||| || ||||||| ||||||    
T  46480323 atcacccagcaagaggattgagcacctgtccaacaaagatgattgttccggtcaagtcttctctaatcataaataagaaagggtggtcagctacaaagtc 46480224  T
Q  118 ta 119  Q
    ||    
T  46480223 ta 46480222  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 5156629 - 5156565
Alignment:
Q  158 gctgcagcagctacggtgcctttctcatttacttcaatgaaagacttgtgaaatatgttggaaac 222  Q
    |||||||||||| | |||||||  |||||||||||||||||||| ||||||||||| || |||||    
T  5156629 gctgcagcagcttcagtgccttcttcatttacttcaatgaaagatttgtgaaatattttagaaac 5156565  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 5160634 - 5160545
Alignment:
Q  182 tcatttacttcaatgaaagacttgtgaaatatgttggaaactaaaaggttttgaccttcaag---cgagtccaccatttttgtcaaacct 268  Q
    |||||||||||||||||||| ||||||||||| || |||||| ||||| | | |||  ||||    ||||||||||||||||||||||||    
T  5160634 tcatttacttcaatgaaagatttgtgaaatattttagaaactgaaaggctatcacccacaagagaagagtccaccatttttgtcaaacct 5160545  T

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Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 268
Target Start/End: Complemental strand, 46544850 - 46544743
Alignment:
Q  161 gcagcagctacggtgcctttctcatttacttcaatgaaagacttgtgaaatatgttggaaactaaaaggttttgaccttcaagcgagtccaccatttttg 260  Q
    ||||||||| | || || || |||||||||||||| ||||||||||| |||||||||||||    |||||||||| |   | | ||||||||||| ||||    
T  46544850 gcagcagcttcagttcccttttcatttacttcaataaaagacttgtggaatatgttggaaatatgaaggttttgatccataggagagtccaccatatttg 46544751  T
Q  261 tcaaacct 268  Q
    ||||||||    
T  46544750 tcaaacct 46544743  T

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Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 5160808 - 5160715
Alignment:
Q  17 gatcactcagaaagaggattgagcacttgtcccgcaaagaggattgtttgggtcgaatcttctctaactagaaataagaaaggatgatcagcta 110  Q
    |||||||||  |||||||||||| ||||||||  ||||||| || |||   ||| ||||||||||||  |||||||||||||| || |||||||    
T  5160808 gatcactcatcaagaggattgagtacttgtccaacaaagagaatggttccagtccaatcttctctaatcagaaataagaaagggtggtcagcta 5160715  T

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Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 46491086 - 46491029
Alignment:
Q  156 tggctgcagcagctacggtgcctttctcatttacttcaatgaaagacttgtgaaatat 213  Q
    |||||||| ||||| |||||||||  |||||||| ||||| |||||||||||||||||    
T  46491086 tggctgcaacagcttcggtgccttcttcatttacatcaataaaagacttgtgaaatat 46491029  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 4581156 - 4581196
Alignment:
Q  182 tcatttacttcaatgaaagacttgtgaaatatgttggaaac 222  Q
    |||||||||||||| ||||||||||||||||| ||||||||    
T  4581156 tcatttacttcaataaaagacttgtgaaatatcttggaaac 4581196  T

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Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 4613613 - 4613653
Alignment:
Q  182 tcatttacttcaatgaaagacttgtgaaatatgttggaaac 222  Q
    |||||||||||||| ||||||||||||||||| ||||||||    
T  4613613 tcatttacttcaataaaagacttgtgaaatatcttggaaac 4613653  T

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Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 51944403 - 51944319
Alignment:
Q  35 ttgagcacttgtcccgcaaagaggattgtttgggtcgaatcttctctaactagaaataagaaaggatgatcagctataaagtcta 119  Q
    |||||||| |||||  |||||| |||||||   ||| ||||||||||||  |||||||||||||| || ||||||| ||||||||    
T  51944403 ttgagcacctgtccaacaaagatgattgttccagtcaaatcttctctaatcagaaataagaaagggtggtcagctacaaagtcta 51944319  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 46506879 - 46506946
Alignment:
Q  52 aaagaggattgtttgggtcgaatcttctctaactagaaataagaaaggatgatcagctataaagtcta 119  Q
    |||||||||||||  |||| |||||||| ||| |||||||||||| || || ||||||| ||||||||    
T  46506879 aaagaggattgttccggtccaatcttctttaattagaaataagaatgggtggtcagctacaaagtcta 46506946  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 46484418 - 46484360
Alignment:
Q  161 gcagcagctacggtgcctttctcatttacttcaatgaaagacttgtgaaatatgttgga 219  Q
    ||||||||| | |||||||  |||||||||||||||||||| ||||| ||||| |||||    
T  46484418 gcagcagcttcagtgccttcttcatttacttcaatgaaagatttgtgcaatatattgga 46484360  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 267
Target Start/End: Original strand, 46548774 - 46548856
Alignment:
Q  185 tttacttcaatgaaagacttgtgaaatatgttggaaactaaaaggttttgaccttcaagcgagtccaccatttttgtcaaacc 267  Q
    ||||||||||||||||||||||||||||| || |||||  |||||| || | |   | | |||| ||||||||||||||||||    
T  46548774 tttacttcaatgaaagacttgtgaaatattttagaaacataaaggtatttatcaataggagagttcaccatttttgtcaaacc 46548856  T

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Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 51944250 - 51944216
Alignment:
Q  182 tcatttacttcaatgaaagacttgtgaaatatgtt 216  Q
    |||||||||||||||||||| ||||||||||||||    
T  51944250 tcatttacttcaatgaaagatttgtgaaatatgtt 51944216  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 53391031 - 53390989
Alignment:
Q  180 tctcatttacttcaatgaaagacttgtgaaatatgttggaaac 222  Q
    |||| ||||||||||||||||||||||||||||| || |||||    
T  53391031 tctcgtttacttcaatgaaagacttgtgaaatatatttgaaac 53390989  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 20144974 - 20144900
Alignment:
Q  194 atgaaagacttgtgaaatatgttggaaactaaaaggttttgaccttcaagcgagtccaccatttttgtcaaacct 268  Q
    ||||||||||||||||||||||  |||||  ||||| |||||||  |||| ||||||||||||||||||||||||    
T  20144974 atgaaagacttgtgaaatatgtgagaaacagaaaggctttgacccgcaagagagtccaccatttttgtcaaacct 20144900  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 20168617 - 20168696
Alignment:
Q  17 gatcactcagaaagaggattgagcacttgtcccgcaaagaggattgtttgggtcgaatcttctctaactagaaataagaa 96  Q
    |||||||||  |||||||||||||||||| ||  ||||||||||||||   ||| ||||||| |||| ||||||||||||    
T  20168617 gatcactcatcaagaggattgagcacttgcccgacaaagaggattgttcccgtcaaatcttccctaattagaaataagaa 20168696  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 20359667 - 20359588
Alignment:
Q  17 gatcactcagaaagaggattgagcacttgtcccgcaaagaggattgtttgggtcgaatcttctctaactagaaataagaa 96  Q
    |||||||||  |||||||||||||||||| ||  ||||||||||||||   ||| ||||||| |||| ||||||||||||    
T  20359667 gatcactcatcaagaggattgagcacttgcccgacaaagaggattgttcccgtcaaatcttccctaattagaaataagaa 20359588  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 268
Target Start/End: Original strand, 20168800 - 20168874
Alignment:
Q  194 atgaaagacttgtgaaatatgttggaaactaaaaggttttgaccttcaagcgagtccaccatttttgtcaaacct 268  Q
    ||||||||||||||||||||||  ||||| |||||| |||||||  | |  || |||||||||||||||||||||    
T  20168800 atgaaagacttgtgaaatatgtgagaaacaaaaaggctttgacccgcgatagaatccaccatttttgtcaaacct 20168874  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 20145157 - 20145078
Alignment:
Q  17 gatcactcagaaagaggattgagcacttgtcccgcaaagaggattgtttgggtcgaatcttctctaactagaaataagaa 96  Q
    |||||||||  |||||||||||||||||| ||  |||||||||||| |   ||| ||||||| |||| ||||||||||||    
T  20145157 gatcactcatcaagaggattgagcacttgcccgacaaagaggattgatcccgtcaaatcttccctaattagaaataagaa 20145078  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 16722507 - 16722421
Alignment:
Q  182 tcatttacttcaatgaaagacttgtgaaatatgttggaaactaaaaggttttgaccttcaagcgagtccaccatttttgtcaaacct 268  Q
    ||||||||||||||||||||||| |||||||||  ||||||  |||| | ||||| |  | | ||||||||||||||||||||||||    
T  16722507 tcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccaccatttttgtcaaacct 16722421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 17699521 - 17699435
Alignment:
Q  182 tcatttacttcaatgaaagacttgtgaaatatgttggaaactaaaaggttttgaccttcaagcgagtccaccatttttgtcaaacct 268  Q
    ||||||||||||||||||||||| |||||||||  ||||||  |||| | ||||| |  | | ||||||||||||||||||||||||    
T  17699521 tcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccaccatttttgtcaaacct 17699435  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 17708630 - 17708544
Alignment:
Q  182 tcatttacttcaatgaaagacttgtgaaatatgttggaaactaaaaggttttgaccttcaagcgagtccaccatttttgtcaaacct 268  Q
    ||||||||||||||||||||||| |||||||||  ||||||  |||| | ||||| |  | | ||||||||||||||||||||||||    
T  17708630 tcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccaccatttttgtcaaacct 17708544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 17736284 - 17736198
Alignment:
Q  182 tcatttacttcaatgaaagacttgtgaaatatgttggaaactaaaaggttttgaccttcaagcgagtccaccatttttgtcaaacct 268  Q
    ||||||| ||||||||||||||| ||||||||| ||| |||  |||| | ||||| |  | | ||||||||||||||||||||||||    
T  17736284 tcatttaattcaatgaaagacttctgaaatatgctggtaacagaaagttcttgacttataggagagtccaccatttttgtcaaacct 17736198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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