View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2580_high_49 (Length: 237)

Name: NF2580_high_49
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2580_high_49
NF2580_high_49
[»] chr6 (2 HSPs)
chr6 (20-108)||(25520388-25520476)
chr6 (161-221)||(25520554-25520614)
[»] chr5 (1 HSPs)
chr5 (24-109)||(42133356-42133433)


Alignment Details
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 25520388 - 25520476
Alignment:
Q  20 aatctcaatatatttaccatgatgaaataattgagctgttccacttcaatctctgtcagtgatgcttgtctcttagttatgtttgtctt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25520388 aatctcaatatatttaccatgatgaaataattgagctgttccacttcaatctctgtcagtgatgcttgtctcttagttatgtttgtctt 25520476  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 25520554 - 25520614
Alignment:
Q  161 tagaaatataaaacaattaggacgagtttacacgtatgttataaatatcaaacaatgatga 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25520554 tagaaatataaaacaattaggacgagtttacacgtatgttataaatatcaaacaatgatga 25520614  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 42133433 - 42133356
Alignment:
Q  24 tcaatatatttaccatgatgaaataattgagctgttccacttcaatctctgtcagtgatgcttgtctcttagttatgtttgtcttg 109  Q
    |||||||| | |||||||||||||||||||||||||| |        |||||  ||||||||||||||||||||||||||||||||    
T  42133433 tcaatatactaaccatgatgaaataattgagctgttcta--------tctgtttgtgatgcttgtctcttagttatgtttgtcttg 42133356  T

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