View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2580_high_55 (Length: 227)

Name: NF2580_high_55
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2580_high_55
NF2580_high_55
[»] chr4 (1 HSPs)
chr4 (178-227)||(15556493-15556542)
[»] chr3 (6 HSPs)
chr3 (184-226)||(46480278-46480320)
chr3 (184-226)||(46491191-46491233)
chr3 (184-217)||(46506843-46506876)
chr3 (190-226)||(47413797-47413833)
chr3 (184-226)||(46474408-46474450)
chr3 (194-226)||(46236395-46236427)


Alignment Details
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 15556542 - 15556493
Alignment:
Q  178 atgattacccagcaagaggattgagcacctgtccaacaaagaggattgtg 227  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  15556542 atgattacccagcaaaaggattaagcacctgtccaacaaagaggattgtg 15556493  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 46480320 - 46480278
Alignment:
Q  184 acccagcaagaggattgagcacctgtccaacaaagaggattgt 226  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  46480320 acccagcaagaggattgagcacctgtccaacaaagatgattgt 46480278  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 46491233 - 46491191
Alignment:
Q  184 acccagcaagaggattgagcacctgtccaacaaagaggattgt 226  Q
    |||||||||||||||||| ||||||||||||||||| ||||||    
T  46491233 acccagcaagaggattgaacacctgtccaacaaagatgattgt 46491191  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 46506843 - 46506876
Alignment:
Q  184 acccagcaagaggattgagcacctgtccaacaaa 217  Q
    ||||||||||||||||||||||||||||||||||    
T  46506843 acccagcaagaggattgagcacctgtccaacaaa 46506876  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 47413797 - 47413833
Alignment:
Q  190 caagaggattgagcacctgtccaacaaagaggattgt 226  Q
    |||||||||||||||| ||||||||||||||||||||    
T  47413797 caagaggattgagcacatgtccaacaaagaggattgt 47413833  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 46474450 - 46474408
Alignment:
Q  184 acccagcaagaggattgagcacctgtccaacaaagaggattgt 226  Q
    ||||| |||||||||| ||||||||||||||||||| ||||||    
T  46474450 acccatcaagaggattaagcacctgtccaacaaagatgattgt 46474408  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 46236395 - 46236427
Alignment:
Q  194 aggattgagcacctgtccaacaaagaggattgt 226  Q
    ||||||||||||||||||| |||||||||||||    
T  46236395 aggattgagcacctgtccagcaaagaggattgt 46236427  T

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