View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2580_high_6 (Length: 479)
Name: NF2580_high_6
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2580_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 119 - 460
Target Start/End: Complemental strand, 28536526 - 28536187
Alignment:
| Q |
119 |
tgcagactattgttgattattcagtttgtttttataccttagcacttatgttgttagttgtctatctcaagctataattataatttctgtgagctgatag |
218 |
Q |
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| T |
28536526 |
tgcagactattgttgatt--tcagtttgtttttataccttagcacttatgttgttagttgtctatctcaagctataattataatttctttgagctgatag |
28536429 |
T |
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| Q |
219 |
tttgtttgaaattatgaaacatttgagatgaaatacagttgtgattgttgtcgaaatttttattgatgtaaaatacttgatttcgaatacttaaaatgaa |
318 |
Q |
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| T |
28536428 |
tttgtttgaaattatgaaacatttgagatgaaatacagttgtgattgttgttgaaatttttattgatgtaaaatacttgatttcgaatacttaaagtgaa |
28536329 |
T |
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| Q |
319 |
atttttattgatgtaagagattgaatgtaagttgctcgatgtaacgaaaagacaacacaacctataagttgagggttgatagtaattaaagatgattttc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28536328 |
atttttattgatgtaagagattgaatgtaagttgctcgatgtaacgaaaagacaacgcaacctataagttgagggttgatagtaattaaagacgattttc |
28536229 |
T |
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| Q |
419 |
gtgaactacaacgaagagagaatccaacttatgtgttaagta |
460 |
Q |
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| T |
28536228 |
gtgaactacaacgaagagagaatccaacttatgtgttaagta |
28536187 |
T |
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