View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2580_high_60 (Length: 207)
Name: NF2580_high_60
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2580_high_60 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 2e-72; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 10866787 - 10866614
Alignment:
| Q |
17 |
caccgtgtactctttgccgtcaagcaacaaaggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaa |
116 |
Q |
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|||||||||||| || ||||| |||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10866787 |
caccgtgtactcattcccgtcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctatcggcatctcgcaacactgtcctaatatagaa |
10866688 |
T |
|
| Q |
117 |
tcgtagtcaaaaccttccatcggtagaccttcaagtgaccttccggtaactctctccactgcttggttcctaat |
190 |
Q |
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| T |
10866687 |
ttgtagtcaaaaccttccatcggtaaaccttcaagtgaccttccggtaactctctccaccgcttggttcctaat |
10866614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 10873518 - 10873691
Alignment:
| Q |
17 |
caccgtgtactctttgccgtcaagcaacaaaggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaa |
116 |
Q |
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|||||||||||| || ||||| |||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10873518 |
caccgtgtactcattcccgtcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctatgggcatctcgcaacactgtcctaatatagaa |
10873617 |
T |
|
| Q |
117 |
tcgtagtcaaaaccttccatcggtagaccttcaagtgaccttccggtaactctctccactgcttggttcctaat |
190 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10873618 |
tcgtaatcaaaaccttccatcggtaaaccttcaagtgaccttccggtaactctctccacggcttggttcctaat |
10873691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 10878589 - 10878762
Alignment:
| Q |
17 |
caccgtgtactctttgccgtcaagcaacaaaggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaa |
116 |
Q |
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|||||||||||| || ||||| |||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10878589 |
caccgtgtactcattcccgtcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctatgggcatctcgcaacactgtcctaatatagaa |
10878688 |
T |
|
| Q |
117 |
tcgtagtcaaaaccttccatcggtagaccttcaagtgaccttccggtaactctctccactgcttggttcctaat |
190 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10878689 |
tcgtaatcaaaaccttccatcggtaaaccttcaagtgaccttccggtaactctctccacggcttggttcctaat |
10878762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 10883660 - 10883833
Alignment:
| Q |
17 |
caccgtgtactctttgccgtcaagcaacaaaggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaa |
116 |
Q |
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|
|||||||||||| || ||||| |||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10883660 |
caccgtgtactcattcccgtcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctatgggcatctcgcaacactgtcctaatatagaa |
10883759 |
T |
|
| Q |
117 |
tcgtagtcaaaaccttccatcggtagaccttcaagtgaccttccggtaactctctccactgcttggttcctaat |
190 |
Q |
| |
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||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10883760 |
tcgtaatcaaaaccttccatcggtaaaccttcaagtgaccttccggtaactctctccacggcttggttcctaat |
10883833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 10887578 - 10887758
Alignment:
| Q |
17 |
caccgtgtactctttgccgtcaagcaacaaaggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaa |
116 |
Q |
| |
|
||||||||| || || ||||| |||||||||||||||||||||||||| || || || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10887578 |
caccgtgtattcattcccgtcgagcaacaaaggaccggcaacacccaccggaatttgaacaaaccctatcggcatctcgcaacactgtcctaatatagaa |
10887677 |
T |
|
| Q |
117 |
tcgtagtcaaaaccttccatcggtagaccttcaagtgaccttccggtaactctctccactgcttggttcctaatctctgct |
197 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
10887678 |
tcgtagtcaaaacctttcatcggtaaaccttcaagtgaccttccggtaaccctctccactgcttggttcctaatctttgct |
10887758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 39676347 - 39676177
Alignment:
| Q |
21 |
gtgtactctttgccgtcaagcaacaaaggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgt |
120 |
Q |
| |
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||||| ||||| || || |||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||| ||||||||||||||||| | |
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| T |
39676347 |
gtgtattctttaccatcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcat |
39676248 |
T |
|
| Q |
121 |
agtcaaaaccttccatcggtagaccttcaagtgaccttccggtaactctctccactgcttggttcctaatc |
191 |
Q |
| |
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| |||||||||||||| |||| |||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
39676247 |
aatcaaaaccttccattggtaaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatc |
39676177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 10046407 - 10046240
Alignment:
| Q |
17 |
caccgtgtactctttgccgtcaagcaacaaaggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaa |
116 |
Q |
| |
|
||||||||||||||| || |||||||||||||| |||||||| ||||| || ||||| ||||| |||||||||||||| ||||||||||||||||| ||| |
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| T |
10046407 |
caccgtgtactctttcccatcaagcaacaaaggtccggcaactcccaccggaatctgaacaaatcctatcggcatctcacaacactgtcctaatatcgaa |
10046308 |
T |
|
| Q |
117 |
tcgtagtcaaaaccttccatcggtagaccttcaagtgaccttccggtaactctctccactgcttggtt |
184 |
Q |
| |
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|| || |||||||||||||| |||| ||| |||||| ||||||||||||||||||| |||||||| |
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| T |
10046307 |
tcataatcaaaaccttccattggtaaacccgagagtgactttccggtaactctctccaccgcttggtt |
10046240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 48 - 148
Target Start/End: Original strand, 30709588 - 30709688
Alignment:
| Q |
48 |
ggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttccatcggtagacctt |
147 |
Q |
| |
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||||| |||||||| || || || || |||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||| ||||| ||||| |
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| T |
30709588 |
ggacccgcaacaccaaccggaatttgaacaaaccctatcggcatctcacaacactgtcccaatatcgaatcgtaatcaaaaccttccaacggtaaacctt |
30709687 |
T |
|
| Q |
148 |
c |
148 |
Q |
| |
|
| |
|
|
| T |
30709688 |
c |
30709688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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