View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2580_high_8 (Length: 458)
Name: NF2580_high_8
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2580_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 149 - 442
Target Start/End: Complemental strand, 22736254 - 22735965
Alignment:
| Q |
149 |
ctgatgcataaccttcagcccagaatcagtggcggatcttgagttattctgttggaagtgttaaattttggtaaaa-atatattaaacagtatcaaaaaa |
247 |
Q |
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| T |
22736254 |
ctgatgcatggccttcagcacagaatcaggggcggatcttgagttattatgttggaggtgttaaattctgataaaatatatattaaacagtatcaaaaaa |
22736155 |
T |
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| Q |
248 |
gtactagaattatgaattgttgtggtggttcgattacatgagtgttacattacatagaatacaattgaaatataaaaaggaggggatgggcgagtcaatt |
347 |
Q |
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| T |
22736154 |
gtaccagaattacgaattgttgtggtggtttgattacatgagtgttacat-----agaatacaattgaaatataaaaaggagggggtgggcgagtcaatt |
22736060 |
T |
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| Q |
348 |
acacgccctccaatccattaggaggttgtttaaccactacatcaaccctaaaatatgtgctatataacgactaatatgttatttatagagaagtt |
442 |
Q |
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| T |
22736059 |
acacgccctccaatccattaggaggttgtttaaccactacatcaaccctaaagtatgtgttatataacgactaatatgttatttgtagagaagtt |
22735965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 22736395 - 22736334
Alignment:
| Q |
8 |
tagcaaaggatctgtatgtttagaaaggatattttgtttattgatttgacaatgtacataaa |
69 |
Q |
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| T |
22736395 |
tagcaaaggatctgtatgtttagaaatgatattttgtttattgatttgacaatgtgcataaa |
22736334 |
T |
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