View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2580_low_13 (Length: 399)
Name: NF2580_low_13
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2580_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 1178746 - 1178468
Alignment:
| Q |
13 |
tgagatgaaaagttgcaattttaaagtaaaagaaatagagaagcgtaatagcttgatatagaaccgccccttatgatcatggtgtgttccggtgtacgac |
112 |
Q |
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| T |
1178746 |
tgagatgaaaagttgcaattttaaagtaaaagaaatagagaagcgtaatagcttgttataaaaccgccccttatgatcatggtgtgttccggtgtacgac |
1178647 |
T |
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| Q |
113 |
acatgtcaatgtctggtactgaccctatacggcattgacacatgtacttatatttgtttatgtaattttctcaaaattgtatcggtgtcaacgtgtaaat |
212 |
Q |
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| T |
1178646 |
acatgtcaatgtctggtcctgacactatacggcattgacacatgtacttatatttgtttatgtaattttctcaagattgtatcagtgtcaacgtgtaagt |
1178547 |
T |
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| Q |
213 |
gtttgtatgtttgtgcttcattctttaggagagggaaggcaatactattaatacctcaagctctcattgatattgatag |
291 |
Q |
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| T |
1178546 |
gtttgtatgtttgtgcttctttctttgggagagggaaggcaatactattaatacctcaagctctcattgatattgatag |
1178468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 49 - 259
Target Start/End: Complemental strand, 1192053 - 1191842
Alignment:
| Q |
49 |
agagaagcgtaatagcttgatatagaaccgccccttatgatc-atggtgtgttccggtgtacgacacatgtcaatgtctggtactgaccctatacggcat |
147 |
Q |
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| T |
1192053 |
agagaagtgtaatagcttgatatagaaccggcacttatgatccacggtgtgttctggtgtacaacacatgttaatgtccgacaccgacacgatgtgacac |
1191954 |
T |
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| Q |
148 |
tgacacatgtacttatatttgtttatgtaattttctcaaaattgtatcggtgtcaacgtgtaaatgtttgtatgtttgtgcttcattctttaggagaggg |
247 |
Q |
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| T |
1191953 |
cgacataagtgattatatttgtttatgtaattttctcaagattagatcggtgtcaacgtgtaaatgtttgtgtgtctgtgcttcattctttgggagaggg |
1191854 |
T |
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| Q |
248 |
aaggcaatacta |
259 |
Q |
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| T |
1191853 |
aaggcaatacta |
1191842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 208
Target Start/End: Complemental strand, 10031601 - 10031563
Alignment:
| Q |
170 |
ttatgtaattttctcaaaattgtatcggtgtcaacgtgt |
208 |
Q |
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| T |
10031601 |
ttatgtcattttctcaaaattttatcggtgtcaacgtgt |
10031563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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