View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2580_low_2 (Length: 623)
Name: NF2580_low_2
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2580_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 242 - 605
Target Start/End: Complemental strand, 37784306 - 37783943
Alignment:
| Q |
242 |
atttattgtgattgtttaggttcattctatttcatgaatcagtattcagaatttgtgtaagttcgttctatttctaaatcaattgcacatgtaaatccca |
341 |
Q |
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||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37784306 |
atttattgtgattgtgtaggttcattctatttcatgaatctgtattcagaatttgtgtaagttcgttctatttctaaatcaattgcacatgtaaatccca |
37784207 |
T |
|
| Q |
342 |
ttctcaaaaaaggtttagccaatggtcattcgctattttctagaatataagggtggttagtgtttgttttaatactaaagtagggggtgtgtttgttatt |
441 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37784206 |
ttctcaaaaaaggtttagccaatggtcattcgctattttctagaatataagggtggttagtggttgttttaatactaaagtagggggtgtgtttgttatt |
37784107 |
T |
|
| Q |
442 |
tagtcaaaagtgggtgcaatttgctctaagtaatttgtctaagagaaaagtcatcaaatattagaaaaacaaacaggagtcgcaatcgaagaaaaagctt |
541 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37784106 |
tagtcaaaagtgggtgcaatttgctctaagtaatgtgtctaagagaaaagtcatcaaatattagaaaaacaaacaggagtcgcaatcgaagaaaaagctt |
37784007 |
T |
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| Q |
542 |
cgcatgggtgatgcgaaagttccttggaatagttgctttagaagttctttatttgccacgtttt |
605 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37784006 |
cgcatgggtgatgcgaaacttccttggaatagttgctttagaagttctttatttgccacgtttt |
37783943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 3 - 178
Target Start/End: Complemental strand, 37784547 - 37784370
Alignment:
| Q |
3 |
tgggtagattatactaacctcctctaaggttgacttaaataacataaacaccccctctaatttcaaaccagacactaacctcccttattttagtatcaaa |
102 |
Q |
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| T |
37784547 |
tgggtaaattatactaacctcccctaaggttgacttaaataacataaacacccactctaatttcaaaccagacactaacctcccttattttagtatcaaa |
37784448 |
T |
|
| Q |
103 |
ttaacaaacacctctcttccatcttaacaccattaaatctctgttaac--tctcactttccctcacattgttatgagc |
178 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37784447 |
ttaacaaactcctcccttccatcttaacaccattaaatctctgttaactctctcactttccctcacattgttatgagc |
37784370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 2758513 - 2758461
Alignment:
| Q |
36 |
cttaaataacataaacaccccctctaatttcaaaccagacactaacctccctt |
88 |
Q |
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||||||||||| |||| |||||||||||| |||| | ||||||||||||||| |
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| T |
2758513 |
cttaaataacactaacatcccctctaattttaaactaaacactaacctccctt |
2758461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 26179674 - 26179622
Alignment:
| Q |
36 |
cttaaataacataaacaccccctctaatttcaaaccagacactaacctccctt |
88 |
Q |
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||||||||||| |||||||||||||| ||| |||| | |||| |||||||||| |
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| T |
26179674 |
cttaaataacacaaacaccccctctagttttaaactaaacacaaacctccctt |
26179622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 11768411 - 11768538
Alignment:
| Q |
15 |
actaacctcctctaaggttgacttaaataacataaacaccccctctaatttcaaaccagacactaacctcccttattttagtatcaaat--taacaaaca |
112 |
Q |
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|||||||||| ||||||||| ||||||||||| ||| |||||||| ||| ||| || |||||||||||||||||||| |||||||| ||| ||| |
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| T |
11768411 |
actaacctcccctaaggttgtcttaaataacacaaaactcccctctagttttaaatcaaacactaacctcccttattttgttatcaaatggacacacaca |
11768510 |
T |
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| Q |
113 |
cctctcttccatcttaacaccattaaat |
140 |
Q |
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|||| ||||||||||||||||||||||| |
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| T |
11768511 |
cctcccttccatcttaacaccattaaat |
11768538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 37 - 153
Target Start/End: Complemental strand, 39985467 - 39985350
Alignment:
| Q |
37 |
ttaaataacataaacaccccctctaatttcaaaccagacactaacctccctta-ttttagtatcaaattaacaaacacctctcttccatcttaacaccat |
135 |
Q |
| |
|
||||||| |||||||||||||| || ||| |||| | |||| ||||||||||| |||| ||||||||| ||||||||| | |||||| |||||||| | |
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| T |
39985467 |
ttaaatagcataaacaccccctttagttttaaactaaacacaaacctcccttattttttttatcaaattgacaaacaccacccttccactttaacaccgt |
39985368 |
T |
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| Q |
136 |
taaatctctgttaactct |
153 |
Q |
| |
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| |||| | ||||||||| |
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| T |
39985367 |
ttaatcaccgttaactct |
39985350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 36073798 - 36073924
Alignment:
| Q |
15 |
actaacctcctctaaggttgacttaaataacataaacacc-ccctctaatttcaaaccagacactaacctcccttattttagtatcaaattaacaaacac |
113 |
Q |
| |
|
|||||||||| ||| ||| ||||||||||| ||| || ||||||| ||| ||| || |||||||||||||||||||| || ||||| ||| |||| |
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| T |
36073798 |
actaacctcccttaaaattgtcttaaataacacaaatacttccctctagttttaaatcaaacactaacctcccttattttgttaccaaatagacacacac |
36073897 |
T |
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| Q |
114 |
ctctcttccatcttaacaccattaaat |
140 |
Q |
| |
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||| ||||||||||||||||||||||| |
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| T |
36073898 |
ctcccttccatcttaacaccattaaat |
36073924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 37 - 153
Target Start/End: Original strand, 11960113 - 11960229
Alignment:
| Q |
37 |
ttaaataacataaacaccccctctaatttcaaaccagacactaacctcccttattttagtatcaaattaacaaacacctctcttccatcttaacaccatt |
136 |
Q |
| |
|
||||||| || |||||||||||||| ||| |||| | |||| ||||||||||||||| ||||||||| | ||||||| | |||||| |||||||| || |
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| T |
11960113 |
ttaaatagcacaaacaccccctctagttttaaactaaacacaaacctcccttattttgttatcaaattgaaaaacaccacccttccactttaacaccgtt |
11960212 |
T |
|
| Q |
137 |
aaatctctgttaactct |
153 |
Q |
| |
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|||| | ||||||||| |
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| T |
11960213 |
taatcaccgttaactct |
11960229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 167
Target Start/End: Complemental strand, 30856 - 30714
Alignment:
| Q |
27 |
taaggttgacttaaataacataaacaccccctctaatttcaaaccagacactaacctcccttattttagtatcaaattaacaaacacctctcttccatct |
126 |
Q |
| |
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||||||| ||||||||||| ||| ||||||| || ||| |||| | ||||||||||||||||||| ||||||||| ||||| || || |||| | || |
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| T |
30856 |
taaggttttcttaaataacaaaaagaccccctttagttttaaactaaacactaacctcccttatttagttatcaaattgacaaatacttcccttcaacct |
30757 |
T |
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| Q |
127 |
taacaccattaaatctctgttaac--tctcactttccctcaca |
167 |
Q |
| |
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|||||| |||||||| | |||| | |||||||||| |||||| |
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| T |
30756 |
taacactattaaatcaccgttatctttctcactttcactcaca |
30714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 19986946 - 19986871
Alignment:
| Q |
37 |
ttaaataacataaacaccccctctaatttcaaaccagacactaacctcccttattttagtatcaaattaacaaaca |
112 |
Q |
| |
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||||||| || ||||||| |||||| ||| |||| | | || |||||||||||||||| ||| ||||||||||||| |
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| T |
19986946 |
ttaaatagcacaaacacctcctctagttttaaactaaatacaaacctcccttattttattattaaattaacaaaca |
19986871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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