View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2580_low_27 (Length: 333)
Name: NF2580_low_27
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2580_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 29875816 - 29876131
Alignment:
| Q |
1 |
tttatgataattatagtgtatgtattgtatccccttatttatattgacaagtgaa-ccacacactacaaccctcttgtattaggaggcagcaatcctttc |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29875816 |
tttatgataattatagtgtatgtattgtatccccttatttgtattgacaagtgaaaccacacactacaaccctcttgtattaggaggcagcaatcctttc |
29875915 |
T |
|
| Q |
100 |
ataatttcccaacctattgtcagccaatcttgttccataagtagaattcttgtactcaaaccatgtaaattctttgtacaagctttcatttcctttcatg |
199 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29875916 |
ataatttcccagcctattgtcagccaatcttgttccataagtagaattcttgtactcaaaccatgtaaattctttgtacaagctttcatttcctttcatg |
29876015 |
T |
|
| Q |
200 |
agtgaaggcaatggtgctattttctcactcaaaggtggtccaccaaagtaaatcattgagagccttggattgatcccatttgccaaaactctatgtctca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29876016 |
agtgaaggcaatggtgctattttctcactcaaaggtggtccaccaaagtaaatcattgagagccttggattgataccatttgccaaaactctatgtctca |
29876115 |
T |
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| Q |
300 |
cacttttgaacctccc |
315 |
Q |
| |
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|||||||||||||||| |
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| T |
29876116 |
cacttttgaacctccc |
29876131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 309
Target Start/End: Complemental strand, 21573084 - 21572884
Alignment:
| Q |
112 |
cctattgtcagccaatcttgttccataagtagaattcttgtactcaaaccatgtaaattctttgtacaa---gctttcatttcctttcatgagtgaaggc |
208 |
Q |
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||||||||| | |||||||| |||||| || |||||||| |||||||||||||| ||| | || || || |||||||||||| ||||| ||||| |
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| T |
21573084 |
cctattgtctgataatcttgtagcataagctgatttcttgtattcaaaccatgtaaactctctatataataagcattcatttccttttatgagacaaggc |
21572985 |
T |
|
| Q |
209 |
aatggtgctattttctcactcaaaggtggtccaccaaagtaaatcattgagagccttggattgatcccatttgccaaaactctatgtctcacacttttga |
308 |
Q |
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|| ||||| ||||||||| |||||| ||| |||||||| |||||||| ||||| || | |||| ||||||||| |||||||| || |||||||| |||| |
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| T |
21572984 |
aaaggtgcaattttctcattcaaagatggaccaccaaaataaatcatggagagtctagatttgaacccatttgctaaaactctgtgcctcacactcttga |
21572885 |
T |
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| Q |
309 |
a |
309 |
Q |
| |
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| |
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| T |
21572884 |
a |
21572884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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