View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2580_low_29 (Length: 325)
Name: NF2580_low_29
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2580_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 9e-98; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 7087289 - 7087481
Alignment:
| Q |
8 |
ccaagaaaataggaaaagccaaagacaaagataaaagtactagccaaccgaatcaacataccaaagcatcttcttcaggcacaaaggataagaagcatca |
107 |
Q |
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| T |
7087289 |
ccaaaaaagtaggaaaagccaaagacaaagataaaagtactagccaaccgaatcaacataccaaagcatcttcttcaggcacaaaggataagaagcatca |
7087388 |
T |
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| Q |
108 |
tggtgtaagagaaactgtagagagaaagataatgttttccacatcaaactctagtggtaaagacatatcacatgaaagaattgtcccatcgag |
200 |
Q |
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| T |
7087389 |
tggtgtaagagaaactgtagagagaaagataatgttttccacatcaaactctagtggtaaagacatatcacacgaaagaattgtcccatcgag |
7087481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 7667080 - 7667254
Alignment:
| Q |
28 |
aaagacaaagataaaagtactagccaaccgaatcaacataccaaagcatcttcttcaggcacaaaggataagaagcatcatggtgtaagagaaactgtag |
127 |
Q |
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| T |
7667080 |
aaagacaaagataaaagtactagccaaccgaatcaacatgcaaaagcatcttcttcaggtacaaaggataagaagcatcatggtgtaagagaaactgtag |
7667179 |
T |
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| Q |
128 |
agagaaagataatgttttccacatcaaactctagtggtaaagacatatcacatgaaagaattgtcccatcgagcg |
202 |
Q |
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| T |
7667180 |
agagaaagataatgttttccacatcaaactctagcggtaaagacatatcacacgaaagaattgtcccatcaagcg |
7667254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 236 - 310
Target Start/End: Original strand, 7087517 - 7087591
Alignment:
| Q |
236 |
caccaatgcataaaggtatcaaagatgatattacaaagtttgttcataaaatatcagcctcagtgcaaccaacac |
310 |
Q |
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| T |
7087517 |
caccaatgcataaaggtatcaaagatgatattacaaagtttgttcataaaatatcagcctcagtgcaaccaacac |
7087591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 236 - 310
Target Start/End: Original strand, 7667288 - 7667362
Alignment:
| Q |
236 |
caccaatgcataaaggtatcaaagatgatattacaaagtttgttcataaaatatcagcctcagtgcaaccaacac |
310 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7667288 |
caccaatgcaaaaaggtatcaaagatgatattacaaagtttgttcataaaatatcagcctcagtgcaaccaacac |
7667362 |
T |
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