View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2580_low_30 (Length: 322)
Name: NF2580_low_30
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2580_low_30 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 1067463 - 1067767
Alignment:
| Q |
18 |
ggaagtatatttgtttagaaatgctggtgctaaccaatcaaaaacaattagaatcaaaagcctccaaaccagaccttacaattgaataaatttccaatca |
117 |
Q |
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| T |
1067463 |
ggaagtatgtttgtttagaaatgctggtgctaaccaatcaaaaacaattagaatcaaaagcctccaaaccagaccttacaattgaataaatttccaatca |
1067562 |
T |
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| Q |
118 |
cggtacacctgaaatttcatgaaaaatagccagacaatggacactaaccaatcacactataaaactgagacaaattctaacatcggacacaacactaatt |
217 |
Q |
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| T |
1067563 |
cggtacacctgaaatttcatgaaaaatagccagacaatggacagtaaccaatcacactataaaactgagacaaattctaacatcggacacaacactaatt |
1067662 |
T |
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| Q |
218 |
ttttgcaagaaaatgttggttggaaaacactgctaattctactcacaagaaaaacactcactgctataaacatataaaaagcaaaaccacacgcacgagg |
317 |
Q |
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| T |
1067663 |
ttttgcaagaaaatgttggttggaaaacactgctaattctactcacaagaaaaacactcactactataaacatataaaaagcaaaaccacacgcacgagg |
1067762 |
T |
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| Q |
318 |
tactc |
322 |
Q |
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| T |
1067763 |
tactc |
1067767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 1067165 - 1067234
Alignment:
| Q |
96 |
caattgaataaatttccaatcacggtacacctgaaatttcatgaaaaatagccagacaatggacactaac |
165 |
Q |
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| T |
1067165 |
caatggaataaatttccaaccactatacatctgaaatttcatgaaaaataaccagataatggacagtaac |
1067234 |
T |
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