View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2580_low_38 (Length: 265)
Name: NF2580_low_38
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2580_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 7095013 - 7095261
Alignment:
| Q |
1 |
tgaatacaggcctctaggtgcattcagacgttctgctcttgccacgtatactggatcctcctcttattatgccttgcagtccctagcaagatgtcctggc |
100 |
Q |
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| T |
7095013 |
tgaatacaggcctctaggtgcattcagacgttctgctcttgccacgtatactggatcctcctcttcttatgccttgcagtccctagcaagatgtcctggc |
7095112 |
T |
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| Q |
101 |
tcacgacaacgataacatagatcgctctttgcggtacatttgtcagcatagtgtcctggatctccacacttgaaacaataaggctttggcttaaagaggt |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095113 |
tcacgacaacgataacatagatcgctctttgcgatacatttgtcagcatagtgtcctggatctccacacttgaaacaataaggctttggcttaaagaggt |
7095212 |
T |
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| Q |
201 |
ctcctctgtctcccgcactaggttccaatgaattattataatccccttt |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095213 |
ctcctctgtctcccgcactaggttccaatgaattattataatccccttt |
7095261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 8376788 - 8376540
Alignment:
| Q |
1 |
tgaatacaggcctctaggtgcattcagacgttctgctcttgccacgtatactggatcctcctcttattatgccttgcagtccctagcaagatgtcctggc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8376788 |
tgaatacaggcctctaggtgcattcagacgttctgctcttgccacgtatactggatcctcctcttcttatgccttgcagtccctagcaagatgtcctggc |
8376689 |
T |
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| Q |
101 |
tcacgacaacgataacatagatcgctctttgcggtacatttgtcagcatagtgtcctggatctccacacttgaaacaataaggctttggcttaaagaggt |
200 |
Q |
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| T |
8376688 |
tcacgacaacgataacatagatcgctctttgcggaacatttgtcagcatagtgtcctggatctccacacttgaaacaataagcctttggcttaaagaggt |
8376589 |
T |
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| Q |
201 |
ctcctctgtctcccgcactaggttccaatgaattattataatccccttt |
249 |
Q |
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| T |
8376588 |
ctcctctgtctccagcactaggttccaatgaattattataatccccttt |
8376540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 15421255 - 15421196
Alignment:
| Q |
129 |
ttgcggtacatttgtcagcatagtgtcctggatctccacacttgaaacaataaggctttg |
188 |
Q |
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|||||||||| |||| |||||| ||||||||||||||||| ||||||||| ||||||| |
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| T |
15421255 |
ttgcggtacaattgttagcataatgtcctggatctccacaacggaaacaatagggctttg |
15421196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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