View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2580_low_4 (Length: 551)
Name: NF2580_low_4
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2580_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 20 - 542
Target Start/End: Original strand, 56098469 - 56098992
Alignment:
| Q |
20 |
tatgtttcatttcattcatacatacatctgcatttatggacatgttaaaaatatttaatttgattaaaaaattaattcaactttcagtcaaaattgaaat |
119 |
Q |
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| T |
56098469 |
tatgtttcatttcattcatacatacatctgcatttatggacatgttaaaaatatttaatttgattaaaaaattaattcaactttcagtcaaaattgaaat |
56098568 |
T |
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| Q |
120 |
ggtatcaaatagtatttggattagattacatgaattttgtttgaccaaatta-----gttgagtattaaatatgaatgagatggatgcagcagtagcagg |
214 |
Q |
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| T |
56098569 |
ggtatcaaata---tttggattagat-acatgaattttgtttgaccaaattaaattagttgagtattaaatatgaatgagatggatgcagcagtagcagg |
56098664 |
T |
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| Q |
215 |
cgggacgttgaagctatca---gtttctgagatgaacacgaggcagcaagtaggagaacagaacaacaatggaacagaacaagacaatgaatgcattgtg |
311 |
Q |
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| T |
56098665 |
---gacgttgaagctatcatcagtttctgagatgaacacgaggcagcaagtaggagaacagaacaacaatggtacagaacaagacaatgaatgcattgtg |
56098761 |
T |
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| Q |
312 |
agggaacaagaccgttttatgccaattgcaaatgtgataaggatcatgcgcaaaattctaccaccacatgcaaaaatatctgatgatgcaaaagaaacaa |
411 |
Q |
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| T |
56098762 |
agggaacaagaccgttttatgccaattgcaaatgtgataaggatcatgcgcaagattctaccaccacatgcaaaaatatctgatgatgcaaaagaaacaa |
56098861 |
T |
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| Q |
412 |
tccaagagtgtgtgtctgagtacatcagcttcataactggagaagccaatgaacgttgtcagagagagcaaaggaagacaataactgcagaagatgtgct |
511 |
Q |
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| T |
56098862 |
tccaagagtgtgtgtctgagtacatcagcttcataactggagaagccaatgaacgttgtcagagagagcaaaggaagacaataactgcagaagatgtgct |
56098961 |
T |
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| Q |
512 |
ttgggctatgagtaagcttggttttgatgat |
542 |
Q |
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| T |
56098962 |
ttgggctatgagtaagcttggttttgatgat |
56098992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 457
Target Start/End: Original strand, 9722705 - 9722763
Alignment:
| Q |
399 |
gcaaaagaaacaatccaagagtgtgtgtctgagtacatcagcttcataactggagaagc |
457 |
Q |
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| T |
9722705 |
gcaaaagaaacagtacaagagtgtgtatcagagtttatcagtttcataactggagaagc |
9722763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 542
Target Start/End: Complemental strand, 14394287 - 14394123
Alignment:
| Q |
378 |
catgcaaaaatatctgatgatgcaaaagaaacaatccaagagtgtgtgtctgagtacatcagcttcataactggagaagccaatgaacgttgtcagagag |
477 |
Q |
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| T |
14394287 |
catgcaaaaatctccgacgacgcaaaagaaaccattcaagaatgtgtatccgaatacataagcttcataacatccgaagcaaacgatcgatgccaaagag |
14394188 |
T |
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| Q |
478 |
agcaaaggaagacaataactgcagaagatgtgctttgggctatgagtaagcttggttttgatgat |
542 |
Q |
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| T |
14394187 |
aacaaagaaaaacagttacagcagaagatatactatgggcaatggggaaacttggttttgatgat |
14394123 |
T |
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