View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2580_low_40 (Length: 258)

Name: NF2580_low_40
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2580_low_40
NF2580_low_40
[»] chr4 (3 HSPs)
chr4 (19-258)||(15556192-15556431)
chr4 (20-217)||(35162619-35162816)
chr4 (62-138)||(35155641-35155717)
[»] chr3 (17 HSPs)
chr3 (21-217)||(16025666-16025862)
chr3 (19-225)||(45883475-45883678)
chr3 (19-133)||(46539177-46539291)
chr3 (27-223)||(46479978-46480174)
chr3 (18-184)||(47397088-47397254)
chr3 (21-217)||(5156427-5156626)
chr3 (21-133)||(5160456-5160568)
chr3 (27-217)||(46498136-46498326)
chr3 (19-217)||(46544652-46544850)
chr3 (27-133)||(46474117-46474223)
chr3 (27-133)||(46484236-46484342)
chr3 (27-217)||(46236538-46236731)
chr3 (30-101)||(46490900-46490971)
chr3 (19-217)||(46548750-46548948)
chr3 (68-133)||(51944119-51944184)
chr3 (27-133)||(46554015-46554121)
chr3 (156-217)||(46532224-46532285)
[»] chr8 (3 HSPs)
chr8 (26-215)||(9692467-9692656)
chr8 (26-215)||(9675445-9675634)
chr8 (19-133)||(21464021-21464135)
[»] chr2 (3 HSPs)
chr2 (26-217)||(20144816-20145007)
chr2 (82-217)||(20168767-20168902)
chr2 (26-215)||(20359326-20359515)
[»] chr7 (2 HSPs)
chr7 (21-133)||(16722332-16722444)
chr7 (21-133)||(17699346-17699458)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 15556192 - 15556431
Alignment:
Q  19 acttcagaattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgac 118  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15556192 acttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctcccggaggtttgac 15556291  T
Q  119 aaaaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgctgct 218  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  15556292 taaaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaagtaaacgaagaaggcactgaagctgctgct 15556391  T
Q  219 gcaacctatggtattttgggaaccaagggtataagccctc 258  Q
    ||||||||||||||| ||  | ||| ||||||||||||||    
T  15556392 gcaacctatggtattatgacagccatgggtataagccctc 15556431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 35162619 - 35162816
Alignment:
Q  20 cttcagaattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgaca 119  Q
    ||||| ||||||||  |||||  | |||| |||| |||||| ||||  | |||||||||| |||||| || |||||||||||||| | ||||||||||||    
T  35162619 cttcaaaattccaaaattcaaattttcatatgggcttgaaacttctcgtgtgctgaaggatctaggagtgattttacctttctcttctggaggtttgaca 35162718  T
Q  120 aaaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgctgc 217  Q
    |||||||||||||||||||  |||||| |||| || ||||| |||||||| || |||||||||||  || |||| ||  ||||||| | |||||||||    
T  35162719 aaaatggtggactcacttgaaggtcaaaaccttttagtttccaacatatttcacaagtctttcattgaagtaaatgagaaaggcaccgtagctgctgc 35162816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 35155641 - 35155717
Alignment:
Q  62 ttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatggtggactcacttg 138  Q
    |||| |||||||||| ||||||||| || |||||||||||||| | || ||||||||||||||||||||||| ||||    
T  35155641 ttctcatatgctgaaagacctaggagtgattttacctttctcttctgggggtttgacaaaaatggtggactctcttg 35155717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 16025666 - 16025862
Alignment:
Q  21 ttcagaattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaa 120  Q
    ||||||||||||||||||||  | |||||||||||||||| |||||||||||||||||| || ||| | ||||||||||||||||| |||||||||||||    
T  16025666 ttcagaattccaaggttcaaggtttcatttgggtttgaaacttctgatatgctgaaggagcttggagtagttttacctttctctcctggaggtttgacaa 16025765  T
Q  121 aaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgctgc 217  Q
    ||||||||||||  ||||    ||||||||| |||||||||  |||||| || || ||||||||| || |||| |||||||| ||||||| ||||||    
T  16025766 aaatggtggactttcttgaacatcaagacctctttgtttctcgcatatttcacaaatctttcatcgaagtaaatgaagaaggaactgaagttgctgc 16025862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 45883678 - 45883475
Alignment:
Q  19 acttcagaattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgac 118  Q
    |||||||||||||||| |||||| | ||||||||| |||||| |||| ||||| |||||||  ||||| |||||| |||||||||||  ||| |||||||    
T  45883678 acttcagaattccaagattcaatgtttcatttgggcttgaaacttctaatatgttgaaggagttaggagtggtttcacctttctctcgtggaagtttgac 45883579  T
Q  119 aaaaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgctgct 218  Q
    ||||||||||||||    | |   ||||||||| | | ||||| |||| || ||  ||||||||||  || | || ||||||||||||||||||||||||    
T  45883578 aaaaatggtggact---atccaaatcaagacctttatatttctcacatttttcactagtctttcattgaagttaatgaagaaggcactgaagctgctgct 45883482  T
Q  219 gcaacct 225  Q
    |||||||    
T  45883481 gcaacct 45883475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 46539177 - 46539291
Alignment:
Q  19 acttcagaattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgac 118  Q
    |||||||||||||||| ||||| || || |||| | |||||| |||| ||||||| ||||| |||||| ||||||||||||||||||  |||||||||||    
T  46539177 acttcagaattccaagattcaaaatttcttttgagcttgaaacttctaatatgcttaaggagctaggaatggttttacctttctctcaaggaggtttgac 46539276  T
Q  119 aaaaatggtggactc 133  Q
    |||||||||||||||    
T  46539277 aaaaatggtggactc 46539291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 46479978 - 46480174
Alignment:
Q  27 attccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatgg 126  Q
    ||||||| ||||||||| ||||||||  |||||| |||||||||||| ||||| |||||  |||||||||||||||||   |||||| ||||||| ||||    
T  46479978 attccaaagttcaatatttcatttggacttgaaacttctgatatgctaaaggagctaggtgtggttttacctttctctggtggaggtctgacaaagatgg 46480077  T
Q  127 tggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgctgctgcaac 223  Q
    || ||||    |   ||||| |||| | |||||| || ||||| || |||||||||||  || |||| ||||||||||||||||||||||| |||||    
T  46480078 tgaactcttcagttagtcaaaacctttgtgtttccaatatatttcacaagtctttcattgaagtaaatgaagaaggcactgaagctgctgcggcaac 46480174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 47397254 - 47397088
Alignment:
Q  18 aacttcagaattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttga 117  Q
    ||||||| ||||||||| |||||  | ||| || || |||||| |||||||||| |||||||  ||||| || ||||||||||||| | ||||||||| |    
T  47397254 aacttcaaaattccaagattcaaattttcaatttggcttgaaacttctgatatgttgaaggagttaggagtgattttacctttctccctcggaggtttaa 47397155  T
Q  118 caaaaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcat 184  Q
    |||||||| ||||||  || ||||||||| |||| |||||||| |||||||| || |||| ||||||    
T  47397154 caaaaatgatggactttctagcgggtcaaaacctttttgtttccaacatatttcagaagtatttcat 47397088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 5156427 - 5156626
Alignment:
Q  21 ttcagaattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaa 120  Q
    |||||||||||||| ||||| || ||||||| | |||||| ||| |||||| | || || |||||| || ||||||||||| |||  |||||||||||||    
T  5156427 ttcagaattccaagattcaaaatttcatttgagcttgaaacttccgatatgttcaaagagctaggagtgattttacctttcactcgtggaggtttgacaa 5156526  T
Q  121 aaatggtggact---cacttgcgggtcaaga-cctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgctg 216  Q
    ||||||||||||   | |||| ||| ||| | ||| | ||||||||| ||||| || || ||||||||  || |||| ||||||||||||||||||||||    
T  5156527 aaatggtggactctcctcttgtggg-caatagcctttctgtttctaaaatatttcacaaatctttcattgaagtaaatgaagaaggcactgaagctgctg 5156625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 5160456 - 5160568
Alignment:
Q  21 ttcagaattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaa 120  Q
    |||||||||||||| ||||| || ||||||| | |||||| ||||||||||||||||||  ||||| ||  |||||||||| |||  | |||||||||||    
T  5160456 ttcagaattccaagattcaaaatttcatttgagcttgaaacttctgatatgctgaaggagttaggagtgactttacctttcactcgtgaaggtttgacaa 5160555  T
Q  121 aaatggtggactc 133  Q
    |||||||||||||    
T  5160556 aaatggtggactc 5160568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 217
Target Start/End: Original strand, 46498136 - 46498326
Alignment:
Q  27 attccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatgg 126  Q
    ||||||||||||||||| |||||||   |||||| |||||||||| | ||||| || ||  ||||||| |||||| ||   ||||||||||| |||||||    
T  46498136 attccaaggttcaatatttcatttgaacttgaaacttctgatatgttaaaggagcttggcgtggttttgcctttcactaatggaggtttgactaaaatgg 46498235  T
Q  127 tggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgctgc 217  Q
    || ||||   || | ||||| |||| | |||||| || |||||||| |||||||||||  || |||| |||||||||||  ||||||||||    
T  46498236 tgaactctgctgtgagtcaaaacctttatgtttccaaaatattccacaagtctttcattgaagtaaatgaagaaggcaccaaagctgctgc 46498326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 46544652 - 46544850
Alignment:
Q  19 acttcagaattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgac 118  Q
    |||| |||||||| |  ||||||||  | |||||| |||||| |||||   |||||||||| |||||| ||||||||||||||||| | |||||||||||    
T  46544652 acttaagaattccgaaattcaatattgcttttgggcttgaaacttctggcgtgctgaaggagctaggagtggttttacctttctctacaggaggtttgac 46544751  T
Q  119 aaaaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgctgc 217  Q
    ||| ||||||||||| | |  || |||| ||||   | |||| ||||||||||| |||||||| ||  || |||| ||| | || ||||||||||||||    
T  46544752 aaatatggtggactctcctatggatcaaaaccttcatatttccaacatattccacaagtcttttattgaagtaaatgaaaagggaactgaagctgctgc 46544850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 133
Target Start/End: Original strand, 46474117 - 46474223
Alignment:
Q  27 attccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatgg 126  Q
    ||||||| ||||||||| ||||||||  |||||| ||| |||||||| ||||| |||||  |||||||||||||||||   | |||  ||||||||||||    
T  46474117 attccaaagttcaatatttcatttggacttgaaacttccgatatgctaaaggagctaggtgtggttttacctttctctggtgaagggctgacaaaaatgg 46474216  T
Q  127 tggactc 133  Q
    |||||||    
T  46474217 tggactc 46474223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 133
Target Start/End: Original strand, 46484236 - 46484342
Alignment:
Q  27 attccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatgg 126  Q
    ||||||| ||||||||| ||||||||  |||||| ||||| |||||| ||||| |||||  |||||||||||||||||   |||||| ||||||| ||||    
T  46484236 attccaaagttcaatatttcatttggacttgaaacttctgttatgctaaaggagctaggtgtggttttacctttctctggtggaggtctgacaaagatgg 46484335  T
Q  127 tggactc 133  Q
    || ||||    
T  46484336 tgaactc 46484342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 217
Target Start/End: Complemental strand, 46236731 - 46236538
Alignment:
Q  27 attccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatgg 126  Q
    |||||||| |||||||| || |||||  |||||| | || ||| | |||||||  ||||| || |||||||||||||| | |||||||| |||||||| |    
T  46236731 attccaagattcaatatttcgtttggaattgaaactactaatacgatgaaggagttaggagtgattttacctttctctgctggaggttttacaaaaattg 46236632  T
Q  127 tgga---ctcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgctgc 217  Q
    ||||    ||  ||| |||| || |||| | |||||| |||||||| || || ||||||||  || |||| |||||||||||||||| ||||||    
T  46236631 tggattcttcttttgagggtgaaaacctatatgtttccaacatatttcacaaatctttcattgaagtaaatgaagaaggcactgaagttgctgc 46236538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 46490900 - 46490971
Alignment:
Q  30 ccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttc 101  Q
    |||||||||||||| ||||||||  |||||| |||||||||||||||||| || ||  ||||||||||||||    
T  46490900 ccaaggttcaatatttcatttggacttgaaacttctgatatgctgaaggagctgggcgtggttttacctttc 46490971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 46548948 - 46548750
Alignment:
Q  19 acttcagaattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgac 118  Q
    ||||||| |||||||| ||||| || | ||||| | |||||| |||  || |||| ||||| |||||| | | | ||||||||| ||| || ||||||||    
T  46548948 acttcaggattccaagattcaaaatattatttgagcttgaaacttcaaatgtgctcaaggaactaggagttgatctacctttctatcctggtggtttgac 46548849  T
Q  119 aaaaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgctgc 217  Q
    |||||||||| |||| | |   | | || |||| | ||||||||| ||||| || |||||||||||  || |||| |||||||| | ||||||||||||    
T  46548848 aaaaatggtgaactctcctattgataaatacctttatgtttctaaaatatttcacaagtctttcattgaagtaaaagaagaaggtaatgaagctgctgc 46548750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 51944119 - 51944184
Alignment:
Q  68 tatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatggtggactc 133  Q
    |||||| ||| | |||||| |||||||||||||||| || |||||||| |||||||||||||||||    
T  51944119 tatgctaaagaagctaggagtggttttacctttctcacctggaggttttacaaaaatggtggactc 51944184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 46554121 - 46554015
Alignment:
Q  27 attccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatgg 126  Q
    |||||||| ||| | || || |||||||||||| ||||| |||||||||||||  | ||| || ||||||||||||||   |||||||| |||||||| |    
T  46554121 attccaagtttcgaaatttcttttgggtttgaactttctaatatgctgaaggagttgggagtgattttacctttctctaatggaggtttaacaaaaatag 46554022  T
Q  127 tggactc 133  Q
    | |||||    
T  46554021 tagactc 46554015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 46532224 - 46532285
Alignment:
Q  156 gtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgctgc 217  Q
    |||||||||||||| ||||| ||||||||  || |||| ||| |||||||||||||||||||    
T  46532224 gtttctaacatatttcaaaattctttcattgaagtaaatgaaaaaggcactgaagctgctgc 46532285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 26 - 215
Target Start/End: Complemental strand, 9692656 - 9692467
Alignment:
Q  26 aattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatg 125  Q
    ||||||||| |||||  | ||||||||| |||||| ||||  ||||  ||||||  ||||| ||  ||||||||||||| | ||||||||||||||||||    
T  9692656 aattccaagattcaaattttcatttgggcttgaaacttctcgtatgacgaaggagttaggagtgagtttacctttctcttctggaggtttgacaaaaatg 9692557  T
Q  126 gtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgct 215  Q
    |||||||| ||||  ||||||||||| | |||||| |||||||| || |||||||||||  || ||||||| ||||||||||||||||||    
T  9692556 gtggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctttcattgaagtaaacgaggaaggcactgaagctgct 9692467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 215
Target Start/End: Complemental strand, 9675634 - 9675445
Alignment:
Q  26 aattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatg 125  Q
    ||||||||| |||||  | ||||||||| |||||| ||||   ||| ||||||| |||||| || |||||||||||||| | ||||||||||||||||||    
T  9675634 aattccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatg 9675535  T
Q  126 gtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgct 215  Q
    |||||||| ||||  ||||||||| | | |||||| |||||||| || ||||||  |||  || |||| || ||||||||||||||||||    
T  9675534 gtggactctcttgaaggtcaagacttttctgtttccaacatatttcacaagtctaccattgaagtaaatgaggaaggcactgaagctgct 9675445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 21464135 - 21464021
Alignment:
Q  19 acttcagaattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgac 118  Q
    ||||||| ||||| |  ||||| || || |||||| |||||  ||||||||||||||| || |||||  |||||||||||||||||   |||| ||||||    
T  21464135 acttcaggattccgaaattcaagatttcttttgggcttgaatgttctgatatgctgaaagagctaggcgtggttttacctttctctgaaggagctttgac 21464036  T
Q  119 aaaaatggtggactc 133  Q
    |||||||||||||||    
T  21464035 aaaaatggtggactc 21464021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 26 - 217
Target Start/End: Original strand, 20144816 - 20145007
Alignment:
Q  26 aattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatg 125  Q
    ||||||||| |||||| | ||||||||| |||||| |  |||||  || |||||  ||||| |||||||||| |||| ||| ||||||||||||||||||    
T  20144816 aattccaagattcaatgtttcatttgggcttgaaactagtgataccctaaaggagttaggagtggttttaccattctttcctggaggtttgacaaaaatg 20144915  T
Q  126 gtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgctgc 217  Q
    |||||||| ||||||||||||  ||| | ||||||| ||||||| || ||||||||||||  | ||||||||||||| || |||| ||||||    
T  20144916 gtggactctcttgcgggtcaaagcctttctgtttctcacatatttcacaagtctttcatcagagtaaacgaagaaggtaccgaagttgctgc 20145007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 82 - 217
Target Start/End: Complemental strand, 20168902 - 20168767
Alignment:
Q  82 taggattggttttacctttctctcccggaggtttgacaaaaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtcttt 181  Q
    ||||| || ||||||| |||| ||| ||||||||||||||||||||||| ||  | |||||||||  ||| ||||||||| ||||||| || ||||||||    
T  20168902 taggagtgattttaccattctttcctggaggtttgacaaaaatggtggattctatcgcgggtcaaagcctttttgtttctcacatatttcacaagtcttt 20168803  T
Q  182 catccaaataaacgaagaaggcactgaagctgctgc 217  Q
    ||||  | ||||||||||||| || |||| ||||||    
T  20168802 catcagagtaaacgaagaaggtaccgaagttgctgc 20168767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 215
Target Start/End: Original strand, 20359326 - 20359515
Alignment:
Q  26 aattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaaaaatg 125  Q
    ||||||||| |||||| | ||||||||| |||||| |  |||||  || |||||  ||||| ||  |||||| |||| ||| |||||||||| |||||||    
T  20359326 aattccaagattcaatgtttcatttgggcttgaaactagtgataccctaaaggagttaggagtgactttaccattctttcctggaggtttgaaaaaaatg 20359425  T
Q  126 gtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaaataaacgaagaaggcactgaagctgct 215  Q
    ||||| ||  | |||||||||  ||| |||||||||  |||||| || ||||||||||||  |  |||||||||||| || |||| ||||    
T  20359426 gtggattctatcgcgggtcaaagcctttttgtttctcgcatatttcacaagtctttcatcagaggaaacgaagaaggtaccgaagttgct 20359515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 16722332 - 16722444
Alignment:
Q  21 ttcagaattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaa 120  Q
    ||||| |||||||| |||||||| || |||| | |||||  ||||||  | || ||| |  ||||||||| |||||||||  |||  |||||||||||||    
T  16722332 ttcaggattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattggctttaccttttactctgggaggtttgacaa 16722431  T
Q  121 aaatggtggactc 133  Q
    |||||||||||||    
T  16722432 aaatggtggactc 16722444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 17699346 - 17699458
Alignment:
Q  21 ttcagaattccaaggttcaatatctcatttgggtttgaaatttctgatatgctgaaggacctaggattggttttacctttctctcccggaggtttgacaa 120  Q
    ||||| |||||||| |||||||| || |||| | |||||  ||||||  | || ||| |  ||||||||| |||||||||  |||  |||||||||||||    
T  17699346 ttcaggattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattggctttaccttttactctgggaggtttgacaa 17699445  T
Q  121 aaatggtggactc 133  Q
    |||||||||||||    
T  17699446 aaatggtggactc 17699458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University