View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2580_low_44 (Length: 250)

Name: NF2580_low_44
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2580_low_44
NF2580_low_44
[»] chr2 (4 HSPs)
chr2 (8-250)||(9361970-9362212)
chr2 (150-199)||(5076781-5076830)
chr2 (154-199)||(28495605-28495650)
chr2 (200-236)||(5076733-5076768)
[»] chr1 (3 HSPs)
chr1 (84-250)||(45237432-45237610)
chr1 (8-70)||(45237656-45237718)
chr1 (154-199)||(17287968-17288013)
[»] chr8 (2 HSPs)
chr8 (8-176)||(16468570-16468738)
chr8 (9-65)||(8813528-8813584)
[»] chr5 (3 HSPs)
chr5 (9-66)||(12874030-12874087)
chr5 (150-199)||(12873897-12873946)
chr5 (14-65)||(16056593-16056644)
[»] chr6 (9 HSPs)
chr6 (14-66)||(27771178-27771230)
chr6 (9-65)||(27118798-27118854)
chr6 (18-70)||(24691762-24691814)
chr6 (154-199)||(8497869-8497914)
chr6 (111-199)||(24845768-24845856)
chr6 (112-199)||(34416887-34416974)
chr6 (154-199)||(23389163-23389208)
chr6 (14-63)||(24845671-24845720)
chr6 (211-250)||(8497937-8497977)
[»] chr4 (10 HSPs)
chr4 (9-199)||(54568412-54568603)
chr4 (111-199)||(53745385-53745473)
chr4 (154-250)||(22206018-22206126)
chr4 (14-65)||(22209291-22209342)
chr4 (14-65)||(23137518-23137569)
chr4 (154-199)||(8649769-8649814)
chr4 (154-199)||(8661576-8661621)
chr4 (209-250)||(54568624-54568666)
chr4 (210-250)||(50938533-50938574)
chr4 (14-63)||(53745288-53745337)
[»] chr7 (8 HSPs)
chr7 (9-65)||(37446804-37446860)
chr7 (150-199)||(25839420-25839469)
chr7 (112-199)||(14591691-14591778)
chr7 (14-57)||(4656263-4656306)
chr7 (112-199)||(16011282-16011369)
chr7 (14-65)||(25839365-25839416)
chr7 (210-250)||(14591628-14591669)
chr7 (210-250)||(16011219-16011260)
[»] chr3 (1 HSPs)
chr3 (106-248)||(26700994-26701142)
[»] scaffold0001 (2 HSPs)
scaffold0001 (150-250)||(414293-414405)
scaffold0001 (17-63)||(414491-414537)


Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 9362212 - 9361970
Alignment:
Q  8 tgagatgaagttaaacgaataagtcgcaacaatgtaaatatatatagttaatagaagtcatatnnnnnnnnnnnnncatgttcacttatacaataaccat 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||    
T  9362212 tgagaagaagttaaacgaataagtcgcaacaatgtaaatatatatagttaatagaagtcatataaaaattaaaaaacatgttcacttatacaataaccat 9362113  T
Q  108 aacaacaaaaatagatgatagaatacatataaaaaagggtgaaactttaatcatcaaaatatattacgaaagacttcgtgataaacaacattagtattct 207  Q
    |||||||||||||||||||||||||||||| ||||||| |  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9362112 aacaacaaaaatagatgatagaatacatatgaaaaaggtttgaactttaatcatcaagatatattacgaaagacttcgtgataaacaacattagtattct 9362013  T
Q  208 cttccatctccatcaacgattagtattttaaaccttgttttga 250  Q
    || ||||||||||||||||||||||||||||||||||||||||    
T  9362012 ctcccatctccatcaacgattagtattttaaaccttgttttga 9361970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 5076830 - 5076781
Alignment:
Q  150 aactttaatcatcaaaatatattacgaaagacttcgtgataaacaacatt 199  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  5076830 aactttaatcatcaagatacattacgaaagacttcgtgataaacaacatt 5076781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 28495605 - 28495650
Alignment:
Q  154 ttaatcatcaaaatatattacgaaagacttcgtgataaacaacatt 199  Q
    |||| |||||| ||| ||||||||||||||||||||||||||||||    
T  28495605 ttaaccatcaagatacattacgaaagacttcgtgataaacaacatt 28495650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 5076768 - 5076733
Alignment:
Q  200 agtattctcttccatctccatcaacgattagtatttt 236  Q
    |||||||||||| ||||||||||||||||||||||||    
T  5076768 agtattctcttc-atctccatcaacgattagtatttt 5076733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 84 - 250
Target Start/End: Complemental strand, 45237610 - 45237432
Alignment:
Q  84 catgttcacttatacaataaccataacaacaaaaatagatgatagaatacatataaaaaagggtgaaactttaatcatcaaaatatattacgaaagactt 183  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||| || |||||||||  ||||||||||||||| ||||||||||||||||||    
T  45237610 catgttcacttatacaataaacataacaacaaaaatagatgataaaatacacatgaaaaagggttgaactttaatcatcaagatatattacgaaagactt 45237511  T
Q  184 cgtgataaacaacat------------tagtattctcttccatctccatcaacgattagtattttaaaccttgttttga 250  Q
    |||||||||||||||            ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45237510 cgtgataaacaacatttgaggtcgttgtagtattctctcccatctccatcaacgattagtattttaaaccttgttttga 45237432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 45237718 - 45237656
Alignment:
Q  8 tgagatgaagttaaacgaataagtcgcaacaatgtaaatatatatagttaatagaagtcatat 70  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  45237718 tgagaagaagttaaacgaataagtcgcaataatgtaaatatatatagtaaatagaagtcatat 45237656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 17288013 - 17287968
Alignment:
Q  154 ttaatcatcaaaatatattacgaaagacttcgtgataaacaacatt 199  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||    
T  17288013 ttaaccatcaaaatacattacgaaagacttcgtgataaacaacatt 17287968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 16468570 - 16468738
Alignment:
Q  8 tgagatgaagttaaacgaataagtcgcaacaatgtaaatatatatagttaatagaagtcatatnnnnnnnnnnnnncatgttcacttatacaataaccat 107  Q
    ||||| ||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||             ||||||||||||||| ||||||||    
T  16468570 tgagaagaatttaaacgaataagttgcaataatgtaaatatatatagttaatagaagtcatataaaacctaaaaaacatgttcacttatacgataaccat 16468669  T
Q  108 aacaacaaaaatagatgatagaatacatataaaaaagggtgaaactttaatcatcaaaatatattacga 176  Q
    ||||||||||||||||||||||||||| || |||||||||  ||||||||||||||| |||||||||||    
T  16468670 aacaacaaaaatagatgatagaatacacatgaaaaagggttgaactttaatcatcaagatatattacga 16468738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 8813584 - 8813528
Alignment:
Q  9 gagatgaagttaaacgaataagtcgcaacaatgtaaatatatatagttaatagaagt 65  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8813584 gagaagaagttaaacgaataagtcgcaacaatgtaaacatatatagttaatagaagt 8813528  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 12874087 - 12874030
Alignment:
Q  9 gagatgaagttaaacgaataagtcgcaacaatgtaaatatatatagttaatagaagtc 66  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12874087 gagaagaagttaaacgaataagtcgcaacaatgtaaacatatatagttaatagaagtc 12874030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 12873946 - 12873897
Alignment:
Q  150 aactttaatcatcaaaatatattacgaaagacttcgtgataaacaacatt 199  Q
    ||||||||||||||| ||| ||||||||||||||| ||||||||||||||    
T  12873946 aactttaatcatcaagatacattacgaaagacttcatgataaacaacatt 12873897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 16056593 - 16056644
Alignment:
Q  14 gaagttaaacgaataagtcgcaacaatgtaaatatatatagttaatagaagt 65  Q
    |||||||| ||||| | |||||| ||||||||||||||||||||||||||||    
T  16056593 gaagttaatcgaatcaatcgcaataatgtaaatatatatagttaatagaagt 16056644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 27771230 - 27771178
Alignment:
Q  14 gaagttaaacgaataagtcgcaacaatgtaaatatatatagttaatagaagtc 66  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27771230 gaagttaaacgaataagtcgcaacaatgtaaacatatatagttaatagaagtc 27771178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 27118798 - 27118854
Alignment:
Q  9 gagatgaagttaaacgaataagtcgcaacaatgtaaatatatatagttaatagaagt 65  Q
    |||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  27118798 gagaagaagttaaacgaatgagtcgcaacaatgtaaacatatatagttaatagaagt 27118854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 24691814 - 24691762
Alignment:
Q  18 ttaaacgaataagtcgcaacaatgtaaatatatatagttaatagaagtcatat 70  Q
    |||||| |||||||||||||||||| || ||||||||||||||||||||||||    
T  24691814 ttaaacaaataagtcgcaacaatgtgaacatatatagttaatagaagtcatat 24691762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 8497869 - 8497914
Alignment:
Q  154 ttaatcatcaaaatatattacgaaagacttcgtgataaacaacatt 199  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||    
T  8497869 ttaattatcaagatatattacgaaagacttcgtgataaacaacatt 8497914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 24845768 - 24845856
Alignment:
Q  111 aacaaaaatagatgatagaatacatataaaaaagggtgaaactttaatcatcaaaatatattacgaaagacttcgtgataaacaacatt 199  Q
    ||||||| || ||| ||| |||||||  ||||||| |  ||| |||| |||||| ||| ||||||||||||||||||||||||||||||    
T  24845768 aacaaaattaaatggtagcatacataacaaaaaggtttgaacattaaccatcaagatacattacgaaagacttcgtgataaacaacatt 24845856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 34416887 - 34416974
Alignment:
Q  112 acaaaaatagatgatagaatacatataaaaaagggtgaaactttaatcatcaaaatatattacgaaagacttcgtgataaacaacatt 199  Q
    ||||||||||||   ||||||||| | ||||| | |  ||||| ||| ||||| ||| ||||||||||||||||||||||||||||||    
T  34416887 acaaaaatagattgaagaatacatttgaaaaatgattgaacttgaatgatcaagatacattacgaaagacttcgtgataaacaacatt 34416974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 23389208 - 23389163
Alignment:
Q  154 ttaatcatcaaaatatattacgaaagacttcgtgataaacaacatt 199  Q
    |||| |||||| ||| ||| ||||||||||||||||||||||||||    
T  23389208 ttaaccatcaagatacattgcgaaagacttcgtgataaacaacatt 23389163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 24845671 - 24845720
Alignment:
Q  14 gaagttaaacgaataagtcgcaacaatgtaaatatatatagttaatagaa 63  Q
    |||||||| ||||| |||||||  |||||||| |||||||||||||||||    
T  24845671 gaagttaatcgaatcagtcgcattaatgtaaacatatatagttaatagaa 24845720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 8497937 - 8497977
Alignment:
Q  211 ccatctccatcaacgattagtatttt-aaaccttgttttga 250  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  8497937 ccatctccatcaacgattagtattttcaaacattgttttga 8497977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 54568412 - 54568603
Alignment:
Q  9 gagatgaagttaaacgaataagtcgcaacaatgtaaatatatatagttaatagaagtcatatnnnnnnnnnnnnncatgttcacttatacaataaccata 108  Q
    |||| ||||||||||||||||||| ||||| |||||| |||||||||||||||||||  ||              ||||||| ||| ||| | ||| |||    
T  54568412 gagaagaagttaaacgaataagtcacaacactgtaaacatatatagttaatagaagttttaacaaaatttaaaaacatgttcccttctacgacaacaata 54568511  T
Q  109 acaacaaaaatagatgatagaatacatataaaaaagggtga-aactttaatcatcaaaatatattacgaaagacttcgtgataaacaacatt 199  Q
     ||||||||  | ||| ||| ||||||| ||||||  |||  ||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  54568512 gcaacaaaatgaaatggtagcatacataaaaaaaaaagtgtgaactttaatcatcaagatacattacgaaagacttcgtgataaacaacatt 54568603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 53745385 - 53745473
Alignment:
Q  111 aacaaaaatagatgatagaatacatataaaaaagggtgaaactttaatcatcaaaatatattacgaaagacttcgtgataaacaacatt 199  Q
    ||||||| || ||| ||| |||||||  ||||||| |  ||| ||||||||||| ||| ||||||||||||||||||||||||||||||    
T  53745385 aacaaaattaaatggtagcatacataacaaaaaggtttgaacattaatcatcaagatacattacgaaagacttcgtgataaacaacatt 53745473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 22206126 - 22206018
Alignment:
Q  154 ttaatcatcaaaatatattacgaaagacttcgtgataaacaacatt------------agtattctcttccatctccatcaacgattagtatttt-aaac 240  Q
    |||| |||||| ||| ||||||||||||||||||||||||||||||            ||| |||||| |||||||||||||||||||||||||| ||||    
T  22206126 ttaaccatcaagatacattacgaaagacttcgtgataaacaacatttgaggtcttattagtgttctct-ccatctccatcaacgattagtattttcaaac 22206028  T
Q  241 cttgttttga 250  Q
    ||||||||||    
T  22206027 cttgttttga 22206018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 22209342 - 22209291
Alignment:
Q  14 gaagttaaacgaataagtcgcaacaatgtaaatatatatagttaatagaagt 65  Q
    |||||||| ||||| |||||||| |||||||| |||||||||||||||||||    
T  22209342 gaagttaatcgaatcagtcgcaaaaatgtaaacatatatagttaatagaagt 22209291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 23137518 - 23137569
Alignment:
Q  14 gaagttaaacgaataagtcgcaacaatgtaaatatatatagttaatagaagt 65  Q
    |||||||| ||||| | |||||| ||||||||||||||||||||||||||||    
T  23137518 gaagttaatcgaattaatcgcaataatgtaaatatatatagttaatagaagt 23137569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 8649769 - 8649814
Alignment:
Q  154 ttaatcatcaaaatatattacgaaagacttcgtgataaacaacatt 199  Q
    |||| |||||| ||| ||||||||||||||||||||||||||||||    
T  8649769 ttaaccatcaagatacattacgaaagacttcgtgataaacaacatt 8649814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 8661576 - 8661621
Alignment:
Q  154 ttaatcatcaaaatatattacgaaagacttcgtgataaacaacatt 199  Q
    |||| |||||| ||| ||||||||||||||||||||||||||||||    
T  8661576 ttaaccatcaagatacattacgaaagacttcgtgataaacaacatt 8661621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 54568624 - 54568666
Alignment:
Q  209 ttccatctccatcaacgattagtatttt-aaaccttgttttga 250  Q
    |||||||||||||||||||||||||||| || |||||||||||    
T  54568624 ttccatctccatcaacgattagtattttcaatccttgttttga 54568666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 50938533 - 50938574
Alignment:
Q  210 tccatctccatcaacgattagtatttt-aaaccttgttttga 250  Q
    ||||||||||||||||||||||||||| ||| ||||||||||    
T  50938533 tccatctccatcaacgattagtattttcaaatcttgttttga 50938574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 53745288 - 53745337
Alignment:
Q  14 gaagttaaacgaataagtcgcaacaatgtaaatatatatagttaatagaa 63  Q
    |||||||| | ||| |||||||  ||||||||||||||||||||||||||    
T  53745288 gaagttaatcaaatcagtcgcattaatgtaaatatatatagttaatagaa 53745337  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 37446804 - 37446860
Alignment:
Q  9 gagatgaagttaaacgaataagtcgcaacaatgtaaatatatatagttaatagaagt 65  Q
    |||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  37446804 gagaagaagttaaacgaataagtcgcaacaatgtaaacatatatcgttaatagaagt 37446860  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 25839420 - 25839469
Alignment:
Q  150 aactttaatcatcaaaatatattacgaaagacttcgtgataaacaacatt 199  Q
    |||||||||| |||||||| |||| |||||||||||||||||||||||||    
T  25839420 aactttaatcgtcaaaatacattatgaaagacttcgtgataaacaacatt 25839469  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 14591778 - 14591691
Alignment:
Q  112 acaaaaatagatgatagaatacatataaaaaagggtgaaactttaatcatcaaaatatattacgaaagacttcgtgataaacaacatt 199  Q
    ||||||||||||   ||||||||| | ||||| | |  ||||| ||| ||||| ||| ||||||||||||||||||||||||||||||    
T  14591778 acaaaaatagattgaagaatacatgtgaaaaaagattgaacttgaatgatcaagatacattacgaaagacttcgtgataaacaacatt 14591691  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 4656263 - 4656306
Alignment:
Q  14 gaagttaaacgaataagtcgcaacaatgtaaatatatatagtta 57  Q
    |||||||||||||||| |||||||||| |||| |||||||||||    
T  4656263 gaagttaaacgaataattcgcaacaatttaaacatatatagtta 4656306  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 16011369 - 16011282
Alignment:
Q  112 acaaaaatagatgatagaatacatataaaaaagggtgaaactttaatcatcaaaatatattacgaaagacttcgtgataaacaacatt 199  Q
    ||||||||||||   ||||||||| | ||||| | |  ||||| ||| ||||| ||| ||||||||||||||| ||||||||||||||    
T  16011369 acaaaaatagattgaagaatacatgtgaaaaaagattgaacttcaatgatcaagatacattacgaaagacttcatgataaacaacatt 16011282  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 25839365 - 25839416
Alignment:
Q  14 gaagttaaacgaataagtcgcaacaatgtaaatatatatagttaatagaagt 65  Q
    |||||||||  |||||||||||| |||||||| |||||||||| ||||||||    
T  25839365 gaagttaaataaataagtcgcaataatgtaaacatatatagttgatagaagt 25839416  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 14591669 - 14591628
Alignment:
Q  210 tccatctccatcaacgattagtatttt-aaaccttgttttga 250  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  14591669 tccatctccatcaacgattagaattttcaaaccttgttttga 14591628  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 16011260 - 16011219
Alignment:
Q  210 tccatctccatcaacgattagtatttt-aaaccttgttttga 250  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  16011260 tccatctccatcaacgattagaattttcaaaccttgttttga 16011219  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 248
Target Start/End: Original strand, 26700994 - 26701142
Alignment:
Q  106 ataacaacaaaaatagatgatagaatacatataaaaaagggtga-aactttaatcatcaaaatatattacgaaagacttcgtgataaacaa-----catt 199  Q
    ||||||||||||  | ||| ||| ||||||| |||||| |||   ||||||||||||||| ||| |||||||||| |||||||||||||||      ||     
T  26700994 ataacaacaaaatgaaatggtagcatacataaaaaaaaaggtttgaactttaatcatcaatatacattacgaaaggcttcgtgataaacaagatcgtatc 26701093  T
Q  200 agtattctcttccatctccatcaacgattagtatttt-aaaccttgtttt 248  Q
    ||||||||| |||||||||||||| |||||||||||| || |||||||||    
T  26701094 agtattctc-tccatctccatcaatgattagtattttcaatccttgtttt 26701142  T

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Target: scaffold0001 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 414405 - 414293
Alignment:
Q  150 aactttaatcatcaaaatatattacgaaagacttcgtgataaacaacatt------------agtattctcttccatctccatcaacgattagtattt-t 236  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||||||            ||||||||||| |||||||||||||||||||||||| |    
T  414405 aactttaatcatcaagatacattaccaaagacttcgtgataaacaacatttgaggtcgtatcagtattctctt-catctccatcaacgattagtatttct 414307  T
Q  237 aaaccttgttttga 250  Q
    || |||||||||||    
T  414306 aatccttgttttga 414293  T

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Target: scaffold0001; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 414537 - 414491
Alignment:
Q  17 gttaaacgaataagtcgcaacaatgtaaatatatatagttaatagaa 63  Q
    ||||||||||||||||| | ||||||||| |||||||||| ||||||    
T  414537 gttaaacgaataagtcgtagcaatgtaaacatatatagttgatagaa 414491  T

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