View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2580_low_5 (Length: 501)
Name: NF2580_low_5
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2580_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 484
Target Start/End: Original strand, 14927747 - 14928212
Alignment:
| Q |
18 |
cttttgatgttggaaattttcatttggcattatggaactgacactcttatatttcagttagacgactcagttctcaaaacaattgaatgttcttccaatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14927747 |
cttttgatgttggaaattttcatttggcattatggaactgacactcttatatttcagttagacgactcagttctcaaaacaattgaatgttcttccaatc |
14927846 |
T |
|
| Q |
118 |
atgaactggaggaatccagaaagttggttctacgcattcgcagaagggatctataccaggtcagccatacagtgaagtacctgataaatttttgacctat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14927847 |
atgaactggaggaatccagaaagttggttctacgcattcgcagaagggatctataccaggtcagccatacagtgaagtaactgataaatttttgacctat |
14927946 |
T |
|
| Q |
218 |
tcttattttggtgacactatttctgataggtagagagaatttaatatttgtgcagacagtaatgataatacataaataccatgtgctgacaaattgacac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14927947 |
tcttattttggtgacactatttctgataggtagagagaatttaatatttgtgcaaacagtaatgat-atacataaataccatgtgctgacaaattgacac |
14928045 |
T |
|
| Q |
318 |
aaacatttactccattttgtagttatgcaatgaattttctgttccaaaggaaaaactagacaacttcaaaagcatcacaccccaagacattgtttgttcc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14928046 |
aaacatttactccattttgtagttatgcaatgaattttctgttccaaaggaaaaactagacaacttcaaaagcatcacaccccaagacattgtctgttcc |
14928145 |
T |
|
| Q |
418 |
caggttgaaaaaactatagtaataagtgtccttttcattcagtatatgtacatgcctgcctatcttc |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14928146 |
caggttgaaaaaactatagtaataagtgtccttttcattcagcatatgtacatgcctgcctatcttc |
14928212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University