View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2580_low_53 (Length: 237)
Name: NF2580_low_53
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2580_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 36982662 - 36982838
Alignment:
| Q |
44 |
ggtaacaactatttgaatagaccaaacagcctgccagagcaagaacttacataggatacatcagagcaacaagaggcctagaaaagagagggaaataaaa |
143 |
Q |
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| T |
36982662 |
ggtaacaactatttcaatagaccaaacagcctgccagagcaagaacttacataggatacaccagagcaacaagaggcctagaaaagagagggaaataaaa |
36982761 |
T |
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| Q |
144 |
gaagggtactattgatcagcatccaactaattaataatgtg-gaaaaataaaggagggatatacgtaatgcattttc |
219 |
Q |
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| T |
36982762 |
gaagggtactattgatcagcatccaactaattaataatgtgaaaaaaataaaggagggatatacgtaatgcattttc |
36982838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 36998170 - 36998237
Alignment:
| Q |
84 |
aagaacttacataggatacatcagagcaacaagaggcctagaaaagagagggaaataaaagaagggta |
151 |
Q |
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| T |
36998170 |
aagaacttacataggatacaccagagcaacaagtggcctataaaatagaaggaaataaaagaagggta |
36998237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 165
Target Start/End: Original strand, 37002068 - 37002156
Alignment:
| Q |
79 |
agagcaagaacttacataggatacatcagagcaacaagaggcctagaa--aagagagggaaataaaagaagggtactattgatcagcat |
165 |
Q |
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| T |
37002068 |
agagcaagaacttacataggatacaccagagcaagaagaggcctagaaagaaatgaaggaaataaaagaagggtagtgttgattagcat |
37002156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 36989189 - 36989235
Alignment:
| Q |
83 |
caagaacttacataggatacatcagagcaacaagaggcctagaaaag |
129 |
Q |
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| T |
36989189 |
caagaacttacataggatacaccagagcaagaagaggcctaggaaag |
36989235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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