View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2580_low_54 (Length: 237)
Name: NF2580_low_54
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2580_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 6242973 - 6242865
Alignment:
| Q |
87 |
aataacattcttgatcctttttggaattcattgatagagttcttttttattcttatagcacatcaaagcaaagattaacatccacaaacccaaataaatc |
186 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6242973 |
aataacattcttgatcctttttggaatccattgaaagagttcttttcgattcttatagaacatcaaagcaaagattaagatccacaaacccaaataaatc |
6242874 |
T |
|
| Q |
187 |
caagcaatt |
195 |
Q |
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||||||||| |
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| T |
6242873 |
caagcaatt |
6242865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 65 - 195
Target Start/End: Original strand, 6325675 - 6325805
Alignment:
| Q |
65 |
taccactctcactcttcccctcaataacattcttgatcctttttggaattcattgatagagttcttttttattcttatagcacatcaaagcaaagattaa |
164 |
Q |
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||||||||||| | || ||||||| ||| ||||||||||||| |||||| |||||||||||||| |||||| ||||||||||||||||||||||||| || |
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| T |
6325675 |
taccactctcagttttaccctcaaaaactttcttgatcctttctggaatccattgatagagttcatttttactcttatagcacatcaaagcaaagataaa |
6325774 |
T |
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| Q |
165 |
catccacaaacccaaataaatccaagcaatt |
195 |
Q |
| |
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||||| ||||||||||||||||| |||||| |
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| T |
6325775 |
gatccaaaaacccaaataaatccatgcaatt |
6325805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 82 - 195
Target Start/End: Original strand, 6346286 - 6346399
Alignment:
| Q |
82 |
ccctcaataacattcttgatcctttttggaattcattgatagagttcttttttattcttatagcacatcaaagcaaagattaacatccacaaacccaaat |
181 |
Q |
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||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||| |||||| |
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| T |
6346286 |
ccctcaaaaacattcttgatcctttgtggaatcatttgatagagttcttttttattctcatagcacatcaaagcaaagagtaagatccacaagcccaaaa |
6346385 |
T |
|
| Q |
182 |
aaatccaagcaatt |
195 |
Q |
| |
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|||||||||||||| |
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| T |
6346386 |
aaatccaagcaatt |
6346399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 6333181 - 6333282
Alignment:
| Q |
94 |
ttcttgatcctttttggaattcattgatagagttcttttttattcttatagcacatcaaagcaaagattaacatccacaaacccaaataaatccaagcaa |
193 |
Q |
| |
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||||||||||||| |||||| ||||||||| ||| |||||| ||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| |
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| T |
6333181 |
ttcttgatcctttctggaatcaattgatagatttcatttttactcttatagcacatcaaagcaaagatgaagatcaacaaacccaaataaatccaagcaa |
6333280 |
T |
|
| Q |
194 |
tt |
195 |
Q |
| |
|
|| |
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|
| T |
6333281 |
tt |
6333282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 195
Target Start/End: Complemental strand, 6219827 - 6219711
Alignment:
| Q |
82 |
ccctcaataacattcttgatcctttttggaat---tcattgatagagttcttttttattcttatagcacatcaaagcaaagattaacatccacaaaccca |
178 |
Q |
| |
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||||||| ||| ||||||||||||| |||||| | ||||||||| |||||| ||||| |||||||||||||| ||||| ||| |||||||| | || |
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| T |
6219827 |
ccctcaaaaactttcttgatcctttctggaatcaatatttgatagagctcttttcgattctcatagcacatcaaagaaaagagtaagatccacaagcaca |
6219728 |
T |
|
| Q |
179 |
aataaatccaagcaatt |
195 |
Q |
| |
|
|| |||||||||||||| |
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|
| T |
6219727 |
aaaaaatccaagcaatt |
6219711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 194
Target Start/End: Complemental strand, 6219310 - 6219198
Alignment:
| Q |
82 |
ccctcaataacattcttgatcctttttggaattcattgatagagttcttttttattcttatagcacatcaaagcaaagattaacatccacaaacccaaat |
181 |
Q |
| |
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||||||||| |||||||||||||| ||||| |||||||||||||||| ||| ||||||| |||||||| ||| ||||| ||| ||| || |||| |
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| T |
6219310 |
ccctcaatagaattcttgatcctttggggaatcatttgatagagttcttttcgatttttatagcccatcaaagaaaatattaagatcaacagcccgaaat |
6219211 |
T |
|
| Q |
182 |
aaatccaagcaat |
194 |
Q |
| |
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|||||||||||| |
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|
| T |
6219210 |
caatccaagcaat |
6219198 |
T |
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