View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2580_low_56 (Length: 234)
Name: NF2580_low_56
Description: NF2580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2580_low_56 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 34531726 - 34531947
Alignment:
| Q |
13 |
aactttttcatgtcaaaaatgagccctagtattgagggcaatatcaaattaaatctatggaaatttaagaatgcaaacctttccatcgtcgggaatgttg |
112 |
Q |
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| T |
34531726 |
aactttttcatgtcaaaaatgagccctagtattgagggcaatatcaaattaaatctatggaaatttaagaatgcaaacctttccatcgtcgggaatgttg |
34531825 |
T |
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| Q |
113 |
agtgcagtgaggagaagagagtatccagtaaacactccaacttcaattgtctttttgggattcaacagcttcaaaagtagagtgattagttgaccagcct |
212 |
Q |
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| T |
34531826 |
agtgcagtgaggagaagagagtatccagtaaacactccaacttcaattgtctttttgggattcaacagcttcaaaagtagagtgattagttgaccagcct |
34531925 |
T |
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| Q |
213 |
caggtgcagttgctatgaaacc |
234 |
Q |
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| T |
34531926 |
caggtgcagttgctatgaaacc |
34531947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 83 - 191
Target Start/End: Original strand, 7589064 - 7589172
Alignment:
| Q |
83 |
atgcaaacctttccatcgtcgggaatgttgagtgcagtgaggagaagagagtatccagtaaacactccaacttcaattgtctttttgggattcaacagct |
182 |
Q |
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| T |
7589064 |
atgcaaacctttccatcatcaggaatgttaagtgctgtgagtagaagagagtatccagtgaaaactccaatttcaattgtctttttagcattcaacagct |
7589163 |
T |
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| Q |
183 |
tcaaaagta |
191 |
Q |
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| T |
7589164 |
tcaagagta |
7589172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 168
Target Start/End: Complemental strand, 42830413 - 42830331
Alignment:
| Q |
86 |
caaacctttccatcgtcgggaatgttgagtgcagtgaggagaagagagtatccagtaaacactccaacttcaattgtcttttt |
168 |
Q |
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| T |
42830413 |
caaacctttccattatatggaatgctaagtgctgtgagtagaagagagtatccagtgaaaactcctacttcaattgtcttttt |
42830331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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