View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2581_high_1 (Length: 561)
Name: NF2581_high_1
Description: NF2581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2581_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 3e-86; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 265 - 453
Target Start/End: Complemental strand, 32146338 - 32146147
Alignment:
| Q |
265 |
cgtaatgtttgagaagagcaaaaacaaaggttaagaatggtaagttataaacaacaaaaactttaggatacaatgtgaactatcattaaaatggtcttct |
364 |
Q |
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| T |
32146338 |
cgtaatgtttgagaagaacaaaaacaaaggttaagaatgataagttataaacaacaaaaactttaggatacaatgtaaactatcattaaaattgtcttct |
32146239 |
T |
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| Q |
365 |
ggcataaacaaatagcatacaatataata---ataacaatcttgtttaagaccaaaatcaataatatgcaaaataatgccaaaattaagata |
453 |
Q |
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| T |
32146238 |
ggcataaacaaatagcatacaatataataataataacaatcttgtttaagaccaaaatcaataatatgcaaaataatgccaaaattaagata |
32146147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 32146782 - 32146632
Alignment:
| Q |
17 |
attgaactaattttgagttgattcggcaaaagtgaggtagttgtaaacttacttatttgagtatcaaattgaatattcgaaataattcctgcttcctctt |
116 |
Q |
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| T |
32146782 |
attgaactaattttgagttgattcggcaaaagtgaggtaattgtaaacttacttatttgagtatcgaattgaatattcgaaataattcctgcttcctctt |
32146683 |
T |
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| Q |
117 |
aattatatttacactcctttacaacattttcctgacaaataaatatgtgtg |
167 |
Q |
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| T |
32146682 |
aattatatttacactcctttacaacattttcctgacaaataaatatgtgtg |
32146632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 470 - 561
Target Start/End: Complemental strand, 32145035 - 32144945
Alignment:
| Q |
470 |
aagttcaattttaactttcaaattgatagtgaatgaatacttgactagtttgtttaaaaattgttacgatgaaatttagtttttaacatgac |
561 |
Q |
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| T |
32145035 |
aagttcaattttaactttcaaattgatagtgaatgaatacttgactagtttgtttaaaaattgttacgatgaaatttag-ttttaacatgac |
32144945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 32146631 - 32146590
Alignment:
| Q |
216 |
aactaatagaaacacttgatagtagtaaattgatcctatcaa |
257 |
Q |
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| T |
32146631 |
aactaatagaaacacttgatagtagtaaattgattctatcaa |
32146590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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