View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2581_high_10 (Length: 248)
Name: NF2581_high_10
Description: NF2581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2581_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 47080955 - 47081184
Alignment:
| Q |
1 |
catctggatttatgaacttgttgttgggagcattgaaaattgtgggtgagtactatccaggacggttaagcaaagcatttgtgatagaccctccatcact |
100 |
Q |
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| T |
47080955 |
catctggatttatgaacttgttgttgggagcattgaaaattgtgggtgagtactatccaggacggttaagcaaagcatttgtgatagaccctccatcact |
47081054 |
T |
|
| Q |
101 |
ttttgcatacttgtggaaggtaaataaacacaattcaaaatctatttctagtactgtttagccactgccagttaaactccaataacaacactatttgctg |
200 |
Q |
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| T |
47081055 |
ttttgcatacttgtggaaggtaaataaacacaattcaaaatctatttctagtactgtttagccactgccagttaaaatccaataacaacactatttgctg |
47081154 |
T |
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| Q |
201 |
tcttgtttgtagttgtgttgggtgtgcact |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
47081155 |
tcttgtttgtagttgtgttgggtgtgcact |
47081184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 140
Target Start/End: Original strand, 7516234 - 7516264
Alignment:
| Q |
110 |
cttgtggaaggtaaataaacacaattcaaaa |
140 |
Q |
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| T |
7516234 |
cttgtggaaggtaaataaacacaattcaaaa |
7516264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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