View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2581_high_4 (Length: 432)
Name: NF2581_high_4
Description: NF2581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2581_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 19 - 417
Target Start/End: Complemental strand, 7423692 - 7423294
Alignment:
| Q |
19 |
ttaagtgtactaatttaatacaagcatctacgcgatttggaaatgaaaacttgctttacaaatgtattcgaaaatactagcaaatatatgcaagttaatt |
118 |
Q |
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| T |
7423692 |
ttaagtgtactaatttaatacaagcatctacgcgatttggaaatgaaaacttgctttacaaatgtattcgaaaatactagcaaatatatgcaagttaatt |
7423593 |
T |
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| Q |
119 |
gtgattattttagtgcaagttaattatcaagcagctacaatcaccatagcctaacaattgctacaaaaatcgaaacaacagatatcaaagacatgtcaac |
218 |
Q |
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| T |
7423592 |
gtgattattttagtgcaagttaattatcaaccagctacaatcaccatagcctaacaattgctacaaaaatcgaaacaacagatatcaaagacatgtcaac |
7423493 |
T |
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| Q |
219 |
tgtcaagtaacgatgtgaacgtgttagaaagttttgatcatatgaattgacatatactggcatcacacacaaagtagaaggaataatgaagggattattg |
318 |
Q |
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| T |
7423492 |
tgtcaagtaaccatgtgaacatgttagaatgttttgatcatatgaattgacatatactggcatcacacacaaagtagaaggaataatgaagggattattg |
7423393 |
T |
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| Q |
319 |
gaaagatcaagaaggttgagtggctcaaaaaacgagagtgaaccatgaatagaagaattcagcttttacccttgaaacttaagcaaattaagctctctg |
417 |
Q |
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| T |
7423392 |
gaaagatcaagaaggttgagtggctcaaaaaacgagagtgaaccatgaatagaagaattcagcttttacccttgaaacttaagcaaattaagctctctg |
7423294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 252 - 417
Target Start/End: Original strand, 6229152 - 6229315
Alignment:
| Q |
252 |
ttgatcatatgaattgacatatactggcatcacacacaaagtagaaggaataatgaagggattattggaaagatcaagaaggttgagtggctcaaaaaac |
351 |
Q |
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| T |
6229152 |
ttgatcatatgaattgacatatactagcatcacaca--aaccaggaggaataatgaagggattattggaaatatcataaaggttgagtggctcaaaatac |
6229249 |
T |
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| Q |
352 |
gagagtgaaccatgaatagaagaattcagcttttacccttgaaacttaagcaaattaagctctctg |
417 |
Q |
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|| |||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||| |
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| T |
6229250 |
gaaagtgaaccatgaatagaagaattcagctttctctcttgaaacagaagcaaattaagctctctg |
6229315 |
T |
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