View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2581_high_5 (Length: 378)

Name: NF2581_high_5
Description: NF2581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2581_high_5
NF2581_high_5
[»] chr4 (5 HSPs)
chr4 (2-208)||(53472289-53472496)
chr4 (208-373)||(53472093-53472258)
chr4 (207-373)||(9009980-9010146)
chr4 (207-324)||(29234732-29234849)
chr4 (36-125)||(29234936-29235030)
[»] chr6 (3 HSPs)
chr6 (252-357)||(22258704-22258809)
chr6 (207-334)||(16909706-16909833)
chr6 (24-92)||(16909953-16910022)
[»] chr5 (1 HSPs)
chr5 (220-357)||(20289716-20289853)
[»] chr3 (1 HSPs)
chr3 (211-260)||(30046656-30046705)
[»] chr1 (1 HSPs)
chr1 (57-89)||(7154999-7155031)


Alignment Details
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 2 - 208
Target Start/End: Complemental strand, 53472496 - 53472289
Alignment:
Q  2 agtcagtacattgctggataccatcttgtgtcatttttcattctgcctttaactatattgttattattcttgcgtcttgttataacaaactggtatcaga 101  Q
    ||||||||||||| |||||||||||||||||||||||||||| || |||| ||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  53472496 agtcagtacattgttggataccatcttgtgtcatttttcattttgtcttttactatatcgttattattcttgcgtcttgttataacaaattggtatcaga 53472397  T
Q  102 gctggtttgaatctgttcaggcggaaacaatggttgg-ggtaaaagtttgaaaacaatggttggaggtaaaagtttgaaagtcgataagatcactgggag 200  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||    
T  53472396 gctggtttgaatttgttcaggcggaaacaatggttggaggtaaaagtttgaaaacaatggttggaggtaaaagtttgaaagtcgacaagttcactaggag 53472297  T
Q  201 gaataatt 208  Q
    ||||||||    
T  53472296 gaataatt 53472289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 208 - 373
Target Start/End: Complemental strand, 53472258 - 53472093
Alignment:
Q  208 tgcttaaacagcaaggtctatgtacacctttgttaaatcctgcaccaaaccctatatttgctgatatcgccactctagagtagaagacacattctacgtt 307  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||| || |||||||||||||||||||    
T  53472258 tgcttaaacagcaaggtctatgtacacctttgttaaagcctgcaccaaaccctctatctgctgatatcgccactctaaaggagaagacacattctacgtt 53472159  T
Q  308 gctccttgctttggaagatcatatcatcactaaggttgctgaagaggataccgctgccggtctgtg 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  53472158 gctccttgctttggaagatcatatcatcactaaggttgctgaagaagataccgctgccggtctgtg 53472093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 207 - 373
Target Start/End: Complemental strand, 9010146 - 9009980
Alignment:
Q  207 ttgcttaaacagcaaggtctatgtacacctttgttaaatcctgcaccaaaccctatatttgctgatatcgccactctagagtagaagacacattctacgt 306  Q
    ||||||||||| |||| |||||| |  ||||| ||||| | ||| ||||||||| ||  | |||||||||||||  | ||| ||||| ||||||||||||    
T  9010146 ttgcttaaacaacaagatctatggatgccttttttaaagcttgcgccaaaccctttacctactgatatcgccaccatggaggagaaggcacattctacgt 9010047  T
Q  307 tgctccttgctttggaagatcatatcatcactaaggttgctgaagaggataccgctgccggtctgtg 373  Q
    ||||||||| |||||||||||||||||||||| |||||| ||||||||||| |||| || |||||||    
T  9010046 tgctccttgttttggaagatcatatcatcactgaggttgttgaagaggatatcgctaccagtctgtg 9009980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 207 - 324
Target Start/End: Complemental strand, 29234849 - 29234732
Alignment:
Q  207 ttgcttaaacagcaaggtctatgtacacctttgttaaatcctgcaccaaaccctatatttgctgatatcgccactctagagtagaagacacattctacgt 306  Q
    |||||||||||||| |||||||  |||||||||||||| |||||| |||| ||| ||  ||||||||||| |||||| ||| | ||| |||| |||||||    
T  29234849 ttgcttaaacagcatggtctatagacacctttgttaaagcctgcatcaaatcctctacctgctgatatcgtcactctggaggaaaaggcacaatctacgt 29234750  T
Q  307 tgctccttgctttggaag 324  Q
    ||||||||||||||||||    
T  29234749 tgctccttgctttggaag 29234732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 29235030 - 29234936
Alignment:
Q  36 ttttcattctgcctttaactatat-----tgttattattcttgcgtcttgttataacaaactggtatcagagctggtttgaatctgttcaggcgg 125  Q
    |||||||||||||||| |||||||     ||| |||||||| |||||  ||||||||||||| ||| ||||||||||| | || |||||||||||    
T  29235030 ttttcattctgccttttactatatattattgtcattattctcgcgtcgcgttataacaaactagtaccagagctggttcggatatgttcaggcgg 29234936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 252 - 357
Target Start/End: Original strand, 22258704 - 22258809
Alignment:
Q  252 ccaaaccctatatttgctgatatcgccactctagagtagaagacacattctacgttgctccttgctttggaagatcatatcatcactaaggttgctgaag 351  Q
    ||||||||| || ||||||||||||||||||| | | |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  22258704 ccaaaccctctacttgctgatatcgccactctggtggagaagacacattctgcgctgctccttgctttggaagatcatatcatcactaaggttgctgaag 22258803  T
Q  352 aggata 357  Q
    ||||||    
T  22258804 aggata 22258809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 207 - 334
Target Start/End: Complemental strand, 16909833 - 16909706
Alignment:
Q  207 ttgcttaaacagcaaggtctatgtacacctttgttaaatcctgcaccaaaccctatatttgctgatatcgccactctagagtagaagacacattctacgt 306  Q
    |||||||||||||| |||||||| |||||||||||||| ||||| ||||||||| ||   |||||||| |  ||||| |   ||||| |||||||||||     
T  16909833 ttgcttaaacagcagggtctatggacacctttgttaaagcctgcgccaaaccctctaccagctgatattgaaactctggtagagaaggcacattctacga 16909734  T
Q  307 tgctccttgctttggaagatcatatcat 334  Q
    |||||||||||||||||||| |||||||    
T  16909733 tgctccttgctttggaagattatatcat 16909706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 16910022 - 16909953
Alignment:
Q  24 atcttgtgtcatttttcattctgcctttaactat-attgttattattcttgcgtcttgttataacaaact 92  Q
    |||||||||| ||||||||| || |||| ||||| ||||| |||||||| ||||| ||||||||||||||    
T  16910022 atcttgtgtcgtttttcattatgtcttttactattattgtcattattctcgcgtcctgttataacaaact 16909953  T

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Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 220 - 357
Target Start/End: Complemental strand, 20289853 - 20289716
Alignment:
Q  220 aaggtctatgtacacctttgttaaatcctgcaccaaaccctatatttgctgatatcgccactctagagtagaagacacattctacgttgctccttgcttt 319  Q
    |||||||||| ||||||||| |||| ||| | ||| ||||| ||  ||||||| |||||||||||||| ||||  ||||||||| |||||||| ||||||    
T  20289853 aaggtctatggacacctttgataaagcctacgccataccctctacctgctgatttcgccactctagaggagaaagcacattctatgttgctccatgcttt 20289754  T
Q  320 ggaagatcatatcatcactaaggttgctgaagaggata 357  Q
    ||| ||||||||||||||| |||| |||||||||||||    
T  20289753 ggatgatcatatcatcactgaggtcgctgaagaggata 20289716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 30046656 - 30046705
Alignment:
Q  211 ttaaacagcaaggtctatgtacacctttgttaaatcctgcaccaaaccct 260  Q
    ||||||| || |||||||| | |||||||||||| |||||||||||||||    
T  30046656 ttaaacaacagggtctatggagacctttgttaaagcctgcaccaaaccct 30046705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 7155031 - 7154999
Alignment:
Q  57 tattgttattattcttgcgtcttgttataacaa 89  Q
    |||||| ||||||||||||||||||||||||||    
T  7155031 tattgtcattattcttgcgtcttgttataacaa 7154999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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