View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2581_low_12 (Length: 217)

Name: NF2581_low_12
Description: NF2581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2581_low_12
NF2581_low_12
[»] chr8 (33 HSPs)
chr8 (8-211)||(2966242-2966445)
chr8 (11-211)||(38181520-38181724)
chr8 (92-177)||(1808093-1808180)
chr8 (98-177)||(19167294-19167375)
chr8 (100-211)||(40125265-40125377)
chr8 (100-202)||(23547986-23548090)
chr8 (98-211)||(17020965-17021079)
chr8 (98-211)||(17551402-17551516)
chr8 (99-211)||(33417144-33417256)
chr8 (92-211)||(15950915-15951034)
chr8 (11-73)||(40125128-40125189)
chr8 (99-177)||(17026565-17026645)
chr8 (99-177)||(17557057-17557137)
chr8 (15-74)||(17026940-17026998)
chr8 (15-74)||(17557432-17557490)
chr8 (98-206)||(18875757-18875865)
chr8 (11-73)||(1910186-1910247)
chr8 (11-72)||(33417332-33417392)
chr8 (98-206)||(1910321-1910431)
chr8 (15-74)||(17026717-17026775)
chr8 (15-74)||(17557209-17557267)
chr8 (11-74)||(19168559-19168621)
chr8 (8-73)||(23547844-23547910)
chr8 (8-69)||(33100199-33100260)
chr8 (99-139)||(17026827-17026867)
chr8 (99-139)||(17557319-17557359)
chr8 (99-138)||(44925284-44925323)
chr8 (11-73)||(1808248-1808309)
chr8 (153-211)||(17953398-17953455)
chr8 (116-202)||(18260461-18260548)
chr8 (16-69)||(22714241-22714294)
chr8 (8-69)||(24672554-24672616)
chr8 (103-137)||(26779811-26779845)
[»] chr7 (37 HSPs)
chr7 (95-211)||(10387722-10387840)
chr7 (95-211)||(10392461-10392578)
chr7 (95-211)||(21671806-21671924)
chr7 (98-211)||(4930835-4930949)
chr7 (99-211)||(27238764-27238877)
chr7 (98-211)||(8268909-8269023)
chr7 (98-211)||(42625956-42626070)
chr7 (11-73)||(12256818-12256880)
chr7 (97-211)||(3046182-3046297)
chr7 (92-202)||(3880586-3880697)
chr7 (8-69)||(10392325-10392386)
chr7 (11-69)||(12181998-12182056)
chr7 (100-211)||(12800000-12800112)
chr7 (11-73)||(26342008-26342069)
chr7 (8-69)||(3046374-3046435)
chr7 (8-73)||(10387586-10387651)
chr7 (8-69)||(27246781-27246842)
chr7 (151-211)||(26286567-26286627)
chr7 (95-211)||(3285112-3285225)
chr7 (8-67)||(6590248-6590307)
chr7 (20-70)||(16373196-16373246)
chr7 (100-211)||(2595438-2595548)
chr7 (11-73)||(3880765-3880826)
chr7 (11-73)||(4931024-4931085)
chr7 (11-73)||(8269097-8269158)
chr7 (11-73)||(12800187-12800248)
chr7 (11-45)||(23319741-23319775)
chr7 (92-138)||(44509759-44509805)
chr7 (36-73)||(2595624-2595661)
chr7 (98-160)||(26341870-26341934)
chr7 (110-175)||(16373040-16373107)
chr7 (11-70)||(27238955-27239013)
chr7 (15-69)||(9815120-9815174)
chr7 (15-69)||(10717045-10717099)
chr7 (11-73)||(42625821-42625882)
chr7 (115-206)||(23319534-23319628)
chr7 (118-211)||(15973365-15973459)
[»] chr1 (32 HSPs)
chr1 (99-211)||(33300612-33300725)
chr1 (98-211)||(38621321-38621435)
chr1 (101-211)||(20107963-20108075)
chr1 (99-212)||(19798369-19798483)
chr1 (98-211)||(25844368-25844483)
chr1 (98-211)||(16834088-16834202)
chr1 (11-73)||(10136126-10136187)
chr1 (8-81)||(11807001-11807075)
chr1 (11-73)||(16648868-16648929)
chr1 (11-73)||(26926954-26927015)
chr1 (100-211)||(47450594-47450706)
chr1 (151-211)||(16036232-16036292)
chr1 (98-211)||(16649003-16649117)
chr1 (8-74)||(8138418-8138484)
chr1 (11-73)||(19798233-19798294)
chr1 (15-81)||(51040759-51040824)
chr1 (11-72)||(47450457-47450517)
chr1 (94-166)||(8138275-8138349)
chr1 (11-73)||(10140894-10140955)
chr1 (11-73)||(16834276-16834337)
chr1 (11-73)||(38621509-38621570)
chr1 (11-73)||(39199995-39200056)
chr1 (92-211)||(39200124-39200243)
chr1 (98-160)||(10135988-10136052)
chr1 (98-160)||(26927089-26927153)
chr1 (8-69)||(46697132-46697193)
chr1 (151-211)||(7882599-7882659)
chr1 (98-138)||(51040890-51040930)
chr1 (15-73)||(25844557-25844614)
chr1 (98-138)||(10140780-10140820)
chr1 (29-69)||(20108157-20108197)
chr1 (125-206)||(11806878-11806961)
[»] chr6 (40 HSPs)
chr6 (101-211)||(19994768-19994880)
chr6 (95-201)||(22694730-22694838)
chr6 (100-211)||(20747672-20747783)
chr6 (101-211)||(17599980-17600092)
chr6 (92-177)||(11534068-11534155)
chr6 (98-211)||(14509586-14509700)
chr6 (92-211)||(2699455-2699575)
chr6 (98-177)||(11559584-11559665)
chr6 (98-211)||(6407229-6407343)
chr6 (99-206)||(4156720-4156828)
chr6 (11-73)||(5856782-5856843)
chr6 (92-211)||(33687010-33687129)
chr6 (8-73)||(11613138-11613203)
chr6 (97-203)||(17914206-17914314)
chr6 (11-68)||(22694607-22694664)
chr6 (100-202)||(25313823-25313926)
chr6 (100-202)||(26201317-26201420)
chr6 (115-211)||(16835543-16835640)
chr6 (11-73)||(6407094-6407155)
chr6 (11-73)||(8748561-8748622)
chr6 (101-211)||(11428573-11428685)
chr6 (11-73)||(11559449-11559510)
chr6 (11-73)||(16835397-16835458)
chr6 (11-73)||(20747535-20747596)
chr6 (15-73)||(11533943-11534000)
chr6 (11-69)||(17963792-17963849)
chr6 (98-160)||(5856644-5856708)
chr6 (8-69)||(17914392-17914453)
chr6 (8-60)||(12405595-12405647)
chr6 (100-160)||(8748423-8748485)
chr6 (35-73)||(11428762-11428800)
chr6 (11-73)||(11569929-11569991)
chr6 (123-206)||(12405754-12405839)
chr6 (11-69)||(14509778-14509835)
chr6 (11-73)||(33686881-33686942)
chr6 (11-60)||(19994628-19994677)
chr6 (11-71)||(4156573-4156632)
chr6 (98-138)||(17963927-17963967)
chr6 (124-177)||(11570138-11570193)
chr6 (8-44)||(17600197-17600233)
[»] chr4 (46 HSPs)
chr4 (98-211)||(37263932-37264046)
chr4 (98-211)||(37259232-37259346)
chr4 (98-211)||(31274127-31274241)
chr4 (98-211)||(6943392-6943507)
chr4 (98-211)||(16421655-16421769)
chr4 (103-211)||(13065177-13065287)
chr4 (98-206)||(55252284-55252393)
chr4 (11-81)||(5270657-5270726)
chr4 (98-211)||(13060074-13060189)
chr4 (11-73)||(5927451-5927512)
chr4 (11-73)||(31728599-31728660)
chr4 (11-73)||(31766673-31766734)
chr4 (98-177)||(51698568-51698649)
chr4 (11-73)||(51698723-51698784)
chr4 (98-211)||(19540547-19540661)
chr4 (98-211)||(32220935-32221049)
chr4 (98-206)||(12823256-12823365)
chr4 (11-73)||(8694514-8694575)
chr4 (11-81)||(29349445-29349514)
chr4 (11-73)||(33468235-33468296)
chr4 (101-211)||(33468373-33468485)
chr4 (11-73)||(37263797-37263858)
chr4 (8-69)||(6943580-6943641)
chr4 (98-160)||(8694376-8694440)
chr4 (8-69)||(39216333-39216394)
chr4 (98-177)||(32081537-32081616)
chr4 (15-69)||(13065052-13065105)
chr4 (11-73)||(16421843-16421904)
chr4 (124-211)||(31269638-31269726)
chr4 (11-73)||(31274315-31274376)
chr4 (11-73)||(37259097-37259158)
chr4 (98-160)||(5270792-5270856)
chr4 (8-69)||(16955123-16955184)
chr4 (98-138)||(31766559-31766599)
chr4 (11-73)||(12823123-12823182)
chr4 (11-69)||(13060267-13060324)
chr4 (13-66)||(16948803-16948856)
chr4 (98-160)||(19906904-19906968)
chr4 (98-138)||(31728734-31728774)
chr4 (11-73)||(19907042-19907106)
chr4 (11-73)||(33462587-33462652)
chr4 (98-211)||(33462726-33462846)
chr4 (8-54)||(23093925-23093971)
chr4 (11-73)||(32220800-32220861)
chr4 (95-176)||(23093752-23093835)
chr4 (33-65)||(32081423-32081455)
[»] scaffold0002 (3 HSPs)
scaffold0002 (98-211)||(4677-4791)
scaffold0002 (100-202)||(443313-443416)
scaffold0002 (15-73)||(4865-4922)
[»] chr3 (35 HSPs)
chr3 (95-211)||(12965252-12965369)
chr3 (98-211)||(757732-757846)
chr3 (98-211)||(23660831-23660946)
chr3 (98-211)||(23665490-23665605)
chr3 (98-211)||(46964625-46964739)
chr3 (98-211)||(7570583-7570698)
chr3 (98-211)||(3419602-3419716)
chr3 (98-211)||(55326391-55326504)
chr3 (11-73)||(7570448-7570509)
chr3 (98-177)||(20520603-20520684)
chr3 (11-73)||(27709732-27709793)
chr3 (98-212)||(27709544-27709658)
chr3 (95-138)||(12111973-12112016)
chr3 (11-73)||(12971048-12971109)
chr3 (11-73)||(14437933-14437994)
chr3 (11-73)||(32473257-32473318)
chr3 (11-73)||(55326578-55326639)
chr3 (15-69)||(12111843-12111897)
chr3 (11-73)||(18468013-18468074)
chr3 (8-81)||(20508415-20508489)
chr3 (11-73)||(20520758-20520819)
chr3 (11-81)||(46964802-46964871)
chr3 (98-177)||(55431875-55431956)
chr3 (11-73)||(55432030-55432091)
chr3 (98-160)||(14438068-14438132)
chr3 (15-72)||(23660727-23660783)
chr3 (15-72)||(23665359-23665415)
chr3 (98-138)||(18467899-18467939)
chr3 (33-73)||(18472807-18472847)
chr3 (98-138)||(32473392-32473432)
chr3 (33-73)||(39775080-39775120)
chr3 (15-72)||(757600-757656)
chr3 (147-211)||(11399974-11400038)
chr3 (11-73)||(3419790-3419851)
chr3 (98-138)||(18472693-18472733)
[»] chr2 (32 HSPs)
chr2 (95-211)||(40846955-40847073)
chr2 (100-211)||(30651527-30651639)
chr2 (98-211)||(1934360-1934475)
chr2 (98-211)||(9184786-9184899)
chr2 (92-177)||(25477656-25477743)
chr2 (98-211)||(9180095-9180208)
chr2 (11-73)||(12361049-12361110)
chr2 (11-73)||(25477527-25477588)
chr2 (11-73)||(30651715-30651776)
chr2 (8-69)||(40846817-40846878)
chr2 (11-73)||(12797726-12797787)
chr2 (11-73)||(25496622-25496683)
chr2 (8-60)||(21523496-21523549)
chr2 (15-73)||(1934229-1934286)
chr2 (11-73)||(9179961-9180021)
chr2 (11-73)||(9184652-9184712)
chr2 (15-73)||(17968200-17968257)
chr2 (11-73)||(17974585-17974646)
chr2 (94-190)||(19896654-19896744)
chr2 (98-138)||(12360935-12360975)
chr2 (98-138)||(18345098-18345138)
chr2 (98-146)||(29678437-29678485)
chr2 (98-177)||(12797573-12797652)
chr2 (98-161)||(17968331-17968396)
chr2 (98-160)||(19891848-19891912)
chr2 (98-135)||(24537390-24537427)
chr2 (8-69)||(34495337-34495398)
chr2 (33-81)||(19891734-19891782)
chr2 (151-211)||(31327366-31327425)
chr2 (11-69)||(19896822-19896880)
chr2 (11-73)||(18345212-18345269)
chr2 (8-69)||(29892459-29892519)
[»] chr5 (36 HSPs)
chr5 (100-211)||(39519008-39519120)
chr5 (104-177)||(20180529-20180604)
chr5 (98-206)||(37248170-37248277)
chr5 (98-211)||(39523647-39523761)
chr5 (90-175)||(16115593-16115680)
chr5 (11-73)||(6154667-6154728)
chr5 (98-177)||(12103672-12103753)
chr5 (11-73)||(26668079-26668140)
chr5 (11-73)||(26939676-26939737)
chr5 (9-69)||(16115462-16115522)
chr5 (98-177)||(6512005-6512086)
chr5 (11-69)||(36424443-36424500)
chr5 (11-73)||(37537172-37537233)
chr5 (11-73)||(37646291-37646352)
chr5 (95-138)||(29167339-29167382)
chr5 (11-73)||(37248034-37248095)
chr5 (11-73)||(39519196-39519257)
chr5 (11-73)||(39523835-39523896)
chr5 (98-160)||(6154802-6154866)
chr5 (98-160)||(26667941-26668005)
chr5 (98-160)||(26939538-26939602)
chr5 (11-72)||(29167207-29167267)
chr5 (98-160)||(36424301-36424365)
chr5 (98-138)||(37537307-37537347)
chr5 (11-73)||(7452554-7452616)
chr5 (11-73)||(6511870-6511931)
chr5 (8-69)||(17159174-17159236)
chr5 (11-73)||(20180388-20180449)
chr5 (100-138)||(37646428-37646466)
chr5 (98-177)||(40148542-40148623)
chr5 (15-72)||(40148698-40148754)
chr5 (98-138)||(7452440-7452480)
chr5 (151-211)||(9726176-9726235)
chr5 (31-69)||(15414160-15414198)
chr5 (11-68)||(36430325-36430380)
chr5 (151-211)||(4872514-4872573)
[»] scaffold0690 (2 HSPs)
scaffold0690 (98-211)||(5841-5956)
scaffold0690 (8-69)||(6032-6093)
[»] scaffold0352 (2 HSPs)
scaffold0352 (98-204)||(7727-7835)
scaffold0352 (11-73)||(7909-7970)
[»] scaffold0009 (1 HSPs)
scaffold0009 (151-206)||(147814-147869)
[»] scaffold0240 (1 HSPs)
scaffold0240 (101-214)||(4581-4696)
[»] scaffold0054 (2 HSPs)
scaffold0054 (98-177)||(29822-29902)
scaffold0054 (151-211)||(26069-26128)
[»] scaffold0057 (1 HSPs)
scaffold0057 (92-137)||(35812-35857)
[»] scaffold0011 (1 HSPs)
scaffold0011 (151-211)||(145845-145904)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-100; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 8 - 211
Target Start/End: Complemental strand, 2966445 - 2966242
Alignment:
Q  8 atctttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatctgatccacttttgtggcatgctgccgcaattttt 107  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  2966445 atctttccttcattcatatccaatgagtttgtttcctccacttttgtggatttgtttcttttgatccgatccacttttgtggcctgctgccgcaattttt 2966346  T
Q  108 gctaaaacagttacaaaatctctatataaattgaagactactcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaattctttctctctg 207  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2966345 gctaaagcagttacaaaatctctatataaattgaagactactcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaattctttctctctt 2966246  T
Q  208 ctcc 211  Q
    ||||    
T  2966245 ctcc 2966242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 38181520 - 38181724
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatctgatccac---ttttgtggca-tgctgccgcaatttt 106  Q
    ||||||| ||||| || |||| |||||||||||||  ||||| || |||||||||||||||||  ||||||   | |||| | | || || |||||||||    
T  38181520 tttcctttattcaaattcaat-agtttgtttcctccgcttttatgcatttgtttcttttgatcatatccacaagtgttgtcgaactgttgtcgcaatttt 38181618  T
Q  107 tgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaattctttctct 204  Q
    ||||||||| |||||||||||||||||||||| || ||||  |||||||| ||||| |||||||||||||||| ||| | |||||| ||| |||||||||    
T  38181619 tgctaaaacggttacaaaatctctatataaatagaggactccactcagtttaaaaaacacaccaaagagtttc-attgagttgtcgggaactctttctct 38181717  T
Q  205 ctgctcc 211  Q
    || ||||    
T  38181718 cttctcc 38181724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 92 - 177
Target Start/End: Complemental strand, 1808180 - 1808093
Alignment:
Q  92 tgctgccgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttc 177  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||| ||||||||| ||||||    
T  1808180 tgctgtcgcaatttttgctaaaacagttacaaaatctctatataaatagaagactacactcagttcaaaaaacacaccaaaaagtttc 1808093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 19167375 - 19167294
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttc 177  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||  |||||||||||||| ||||||||||||||||    
T  19167375 cgcaatttttgctgaaacagttacaaaatctctatataaatagaagactccactcagttcaaaaaacacaccaaagagtttc 19167294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 100 - 211
Target Start/End: Original strand, 40125265 - 40125377
Alignment:
Q  100 caatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaattc 197  Q
    ||||||||||||||||||||||| ||||||||||||||| || ||||  |||||||||||||| |||||||||||||||| ||| | |||||| ||| ||    
T  40125265 caatttttgctaaaacagttacagaatctctatataaatagaggactccactcagttcaaaaaacacaccaaagagtttc-attgagttgtcgggaactc 40125363  T
Q  198 tttctctctgctcc 211  Q
    ||||||||| ||||    
T  40125364 tttctctcttctcc 40125377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 100 - 202
Target Start/End: Original strand, 23547986 - 23548090
Alignment:
Q  100 caatttttgctaaaacagttacaaaatctctatataaattgaagactactc--agttcaaaaatcacaccaaagagtttctattaaattgtcgagaattc 197  Q
    ||||||||||||||||||||||| ||||||||||||||| || |||| | |  ||||||||||||||||||||||||||||||| | | |||||||| ||    
T  23547986 caatttttgctaaaacagttacacaatctctatataaatagaggactccacctagttcaaaaatcacaccaaagagtttctattgagtggtcgagaactc 23548085  T
Q  198 tttct 202  Q
    |||||    
T  23548086 tttct 23548090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 17021079 - 17020965
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||||||||||||||||||||||||| ||||||| || ||||  ||||||||||| || |||||||||||||||| ||||| ||||||  ||     
T  17021079 cgcaatttttgctaaaacagttacaaaatctctgtataaatagaggactccactcagttcaagaaacacaccaaagagtttc-attaagttgtcggaaac 17020981  T
Q  196 tctttctctctgctcc 211  Q
    ||||||||||| ||||    
T  17020980 tctttctctcttctcc 17020965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 17551516 - 17551402
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||||||||||||||||||||||||| ||||||| || ||||  ||||||||||| || |||||||||||||||| ||||| ||||||  ||     
T  17551516 cgcaatttttgctaaaacagttacaaaatctctgtataaatagaggactccactcagttcaagaaacacaccaaagagtttc-attaagttgtcggaaac 17551418  T
Q  196 tctttctctctgctcc 211  Q
    ||||||||||| ||||    
T  17551417 tctttctctcttctcc 17551402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 99 - 211
Target Start/End: Complemental strand, 33417256 - 33417144
Alignment:
Q  99 gcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaatt 196  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||  ||| |||||| ||| ||||| |||||||||| ||| | |||||| ||| |    
T  33417256 gcaatttttgctaaaacagttacaaaatctctatataaatagaggactccacttagttcataaa-cacactaaagagtttc-attgagttgtcgggaact 33417159  T
Q  197 ctttctctctgctcc 211  Q
    |||||||||| ||||    
T  33417158 ctttctctcttctcc 33417144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 15950915 - 15951034
Alignment:
Q  92 tgctgccgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtc 189  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||  || ||||  ||| |||||||||| ||||||||||| |||| ||| | |||||    
T  15950915 tgctgtcgcaatttttgctaaaacagttacagaatctctatataaaaagaggactccacttagttcaaaaa-cacaccaaagaatttc-attgagttgtc 15951012  T
Q  190 gagaattctttctctctgctcc 211  Q
    | ||| ||||||||||| ||||    
T  15951013 gggaactctttctctcttctcc 15951034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 40125128 - 40125189
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  40125128 tttccttcattcaaatccaat-agtttgtttcctccacttttgtggatttgtttcttttgatc 40125189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 17026645 - 17026565
Alignment:
Q  99 gcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttc 177  Q
    |||||||||||||||||| ||||| ||||||||||||||| || ||||  ||||| |||||||| ||||||||||||||||    
T  17026645 gcaatttttgctaaaacaattacagaatctctatataaatagaggactccactcaattcaaaaaacacaccaaagagtttc 17026565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 17557137 - 17557057
Alignment:
Q  99 gcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttc 177  Q
    |||||||||||||||||| ||||| ||||||||||||||| || ||||  ||||| |||||||| ||||||||||||||||    
T  17557137 gcaatttttgctaaaacaattacagaatctctatataaatagaggactccactcaattcaaaaaacacaccaaagagtttc 17557057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 17026998 - 17026940
Alignment:
Q  15 cttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatct 74  Q
    ||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  17026998 cttcattcaaatccaat-agtttgtttcctccacttttgtggatttgtttcttttgatct 17026940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 17557490 - 17557432
Alignment:
Q  15 cttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatct 74  Q
    ||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  17557490 cttcattcaaatccaat-agtttgtttcctccacttttgtggatttgtttcttttgatct 17557432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 98 - 206
Target Start/End: Original strand, 18875757 - 18875865
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||| ||||||||||||| ||||||||||||||| || ||||  ||||||||||| || ||||||| |||||||| ||| | |||||| |||     
T  18875757 cgcaatttttg-taaaacagttacagaatctctatataaatagaggactccactcagttcaataaacacaccatagagtttc-attgagttgtcgggaac 18875854  T
Q  196 tctttctctct 206  Q
    |||||||||||    
T  18875855 tctttctctct 18875865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 1910186 - 1910247
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||| ||||||| |||||||||||||||||||||||||||    
T  1910186 tttccttcattcaaatccaat-agtttatttcctcaacttttgtggatttgtttcttttgatc 1910247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 33417392 - 33417332
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgat 72  Q
    ||||||||||||| ||||||| ||||||||||||| ||| ||||||||||||||||||||||    
T  33417392 tttccttcattcaaatccaat-agtttgtttcctccactattgtggatttgtttcttttgat 33417332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 206
Target Start/End: Original strand, 1910321 - 1910431
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagtt-caaaaatcacaccaaagagtttctattaaattgtcgagaa 194  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||  |||   |||||||  ||||| |||||||||||||||| ||| | |||||| |||    
T  1910321 cgcaatttttgctaaaacagttacagaatctctatataaatagagtactccgctcagttaaaaaaaacacaccaaagagtttc-attgagttgtcgggaa 1910419  T
Q  195 ttctttctctct 206  Q
     |||||||||||    
T  1910420 ctctttctctct 1910431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 17026775 - 17026717
Alignment:
Q  15 cttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatct 74  Q
    ||||||||| ||||||| ||||||||||||| |||||||||||||| |||||||||||||    
T  17026775 cttcattcaaatccaat-agtttgtttcctccacttttgtggatttatttcttttgatct 17026717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 17557267 - 17557209
Alignment:
Q  15 cttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatct 74  Q
    ||||||||| ||||||| ||||||||||||| |||||||||||||| |||||||||||||    
T  17557267 cttcattcaaatccaat-agtttgtttcctccacttttgtggatttatttcttttgatct 17557209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 19168621 - 19168559
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatct 74  Q
    ||||||| ||||| ||| ||| ||||||||||||| ||||||||||||||||||||||||||||    
T  19168621 tttcctttattcaaatctaat-agtttgtttcctccacttttgtggatttgtttcttttgatct 19168559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 23547844 - 23547910
Alignment:
Q  8 atctttccttcattcata-tccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    |||||||||||||||| | | |||||||||||||||||| |||||||||||| |||| |||||||||    
T  23547844 atctttccttcattcaaaattcaatgagtttgtttcctccacttttgtggatctgttccttttgatc 23547910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 33100260 - 33100199
Alignment:
Q  8 atctttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    |||||| ||||||||||| ||||||||||||||| ||| | |||||||| ||||||||||||    
T  33100260 atcttttcttcattcataaccaatgagtttgttttctccatttttgtggttttgtttctttt 33100199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 17026867 - 17026827
Alignment:
Q  99 gcaatttttgctaaaacagttacaaaatctctatataaatt 139  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  17026867 gcaatttttgctaaaacagttacagaatctctatataaatt 17026827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 17557359 - 17557319
Alignment:
Q  99 gcaatttttgctaaaacagttacaaaatctctatataaatt 139  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  17557359 gcaatttttgctaaaacagttacagaatctctatataaatt 17557319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 44925284 - 44925323
Alignment:
Q  99 gcaatttttgctaaaacagttacaaaatctctatataaat 138  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  44925284 gcaatttttgctaaaacagttacagaatctctatataaat 44925323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 1808309 - 1808248
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||| ||| ||||||||| ||| |||| ||||||||||||||||||||||    
T  1808309 tttccttcattcaaatctaat-agtttgtttgctccacttgtgtggatttgtttcttttgatc 1808248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 17953398 - 17953455
Alignment:
Q  153 ttcaaaaatcacaccaaagagtttctattaaattgtcgagaattctttctctctgctcc 211  Q
    ||||||||||||||||||||| ||||||| | |||||||||| ||||||||||| ||||    
T  17953398 ttcaaaaatcacaccaaagag-ttctattgagttgtcgagaactctttctctcttctcc 17953455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 202
Target Start/End: Complemental strand, 18260548 - 18260461
Alignment:
Q  116 agttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaattctttct 202  Q
    ||||||||||||||||||||||| || ||||  ||||| |||| ||||||||||||| ||||| | || | |||||||||| |||||||    
T  18260548 agttacaaaatctctatataaatagaggactccactcaattcataaatcacaccaaatagttt-tgttgagttgtcgagaactctttct 18260461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 22714241 - 22714294
Alignment:
Q  16 ttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    ||||||||||| ||||||||||||||| |||| |||| ||| ||||||||||||    
T  22714241 ttcattcatattcaatgagtttgtttcatctaattttttgggtttgtttctttt 22714294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 24672554 - 24672616
Alignment:
Q  8 atctttccttcattcatatcc-aatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    ||||||| |||||| |||||| ||||||||||||||||| |||| ||||| ||||||| ||||    
T  24672554 atctttcattcatttatatcccaatgagtttgtttcctccacttatgtgggtttgtttatttt 24672616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 26779845 - 26779811
Alignment:
Q  103 tttttgctaaaacagttacaaaatctctatataaa 137  Q
    |||||||||||| ||||||||||||||||||||||    
T  26779845 tttttgctaaaatagttacaaaatctctatataaa 26779811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 95 - 211
Target Start/End: Original strand, 10387722 - 10387840
Alignment:
Q  95 tgccgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgag 192  Q
    |||||||||||||||||||| ||||||||||||||||||||||| || ||||  ||| ||||||||||||||| ||||||||||||||| | |||||||     
T  10387722 tgccgcaatttttgctaaaatagttacaaaatctctatataaatagaggactccacttagttcaaaaatcacatcaaagagtttctattgagttgtcgat 10387821  T
Q  193 aattctttctctctgctcc 211  Q
    || ||||||||||| ||||    
T  10387822 aactctttctctcttctcc 10387840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 95 - 211
Target Start/End: Original strand, 10392461 - 10392578
Alignment:
Q  95 tgccgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgag 192  Q
    ||||||||||||||| ||||||||| |||||||||||||||||| || ||||  ||||||||||||||||||| ||||||||||||||| | ||||| ||    
T  10392461 tgccgcaatttttgccaaaacagtt-caaaatctctatataaatagaggactccactcagttcaaaaatcacatcaaagagtttctattgagttgtctag 10392559  T
Q  193 aattctttctctctgctcc 211  Q
    || ||||||||||| ||||    
T  10392560 aactctttctctcttctcc 10392578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 95 - 211
Target Start/End: Complemental strand, 21671924 - 21671806
Alignment:
Q  95 tgccgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgag 192  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||  |||  ||||||||||||||||| ||||||||||||||||| | |||  |||    
T  21671924 tgccgcaatttttgctaaaacagttacaaaatctctatataaatagagtactccactcagttcaaaaatcataccaaagagtttctattgagttgctgag 21671825  T
Q  193 aattctttctctctgctcc 211  Q
    || | ||||||||| ||||    
T  21671824 aactttttctctcttctcc 21671806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 4930949 - 4930835
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  |||||||||||||| |||||||||||||||| ||| | |||||| |||     
T  4930949 cgcaatttttgctaaaacagttacagaatctctatataaatagaggactccactcagttcaaaaaacacaccaaagagtttc-attgagttgtcgggaac 4930851  T
Q  196 tctttctctctgctcc 211  Q
    ||||||||||| ||||    
T  4930850 tctttctctcttctcc 4930835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 99 - 211
Target Start/End: Complemental strand, 27238877 - 27238764
Alignment:
Q  99 gcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaatt 196  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||  ||||||||||| || |||||||||||||||| ||| | |||||| ||| |    
T  27238877 gcaatttttgctaaaacagttacaaaatctctatataaatagaggactccactcagttcaataaacacaccaaagagtttc-attgagttgtcgggaact 27238779  T
Q  197 ctttctctctgctcc 211  Q
    |||||||||| ||||    
T  27238778 ctttctctcttctcc 27238764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 8269023 - 8268909
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaaga--ctactcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||||||||||||||| |||||||||| |||||| || ||  |||||| |||||||||| ||||||||||||||| ||| | ||||||||||     
T  8269023 cgcaatttttgctaaaacagttataaaatctctaaataaatagaggactctactcggttcaaaaattacaccaaagagtttc-attgagttgtcgagaac 8268925  T
Q  196 tctttctctctgctcc 211  Q
    ||||||||||| ||||    
T  8268924 tctttctctcttctcc 8268909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 42625956 - 42626070
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  ||||||||||||||| ||||||| ||||||| ||| | |||||| |||     
T  42625956 cgcaatttttgctaaaacagttacataatctctatataaatagaggactccactcagttcaaaaattacaccaatgagtttc-attgagttgtcgggaac 42626054  T
Q  196 tctttctctctgctcc 211  Q
    ||||||||||| ||||    
T  42626055 tctttctctcttctcc 42626070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 12256880 - 12256818
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12256880 tttccttcattcaaatccaatgagtttgtttcctccacttttgtggatttgtttcttttgatc 12256818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 97 - 211
Target Start/End: Complemental strand, 3046297 - 3046182
Alignment:
Q  97 ccgcaatttttgctaaaacagttacaaaatctctatataaattgaaga--ctactcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaa 194  Q
    |||||||||||||||||||||||||||| ||||||||| ||| || ||  ||||||||||||||||| |||||||| |||||||||| | ||| ||| ||    
T  3046297 ccgcaatttttgctaaaacagttacaaa-tctctatatcaatagatgattctactcagttcaaaaattacaccaaaaagtttctattgagttggcgataa 3046199  T
Q  195 ttctttctctctgctcc 211  Q
     ||||||||||| ||||    
T  3046198 ctctttctctcttctcc 3046182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 92 - 202
Target Start/End: Complemental strand, 3880697 - 3880586
Alignment:
Q  92 tgctgccgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtc 189  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||  ||||||||| |||| |||||||||||||||| ||| | |||||    
T  3880697 tgctgtcgcaatttttgctaaaatagttacaaaatctctatataaatagaggactccactcagttctaaaaacacaccaaagagtttc-attgagttgtc 3880599  T
Q  190 gagaattctttct 202  Q
    | ||| |||||||    
T  3880598 gggaactctttct 3880586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 10392325 - 10392386
Alignment:
Q  8 atctttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  10392325 atctttccttcattcaaatccaatgagtttgtttcctccacttttgtggatttgtttctttt 10392386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 12181998 - 12182056
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    |||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  12181998 tttccttcgttcaaatccaatgagtttgtttcctccacttttgtggatttgtttctttt 12182056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 12800112 - 12800000
Alignment:
Q  100 caatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaattc 197  Q
    ||||||||||||||||||||||| |||| |||||||||| || ||||  ||| |||||||||| |||||||||||||||| ||| | ||||||  || ||    
T  12800112 caatttttgctaaaacagttacagaatcactatataaatagaggacttcacttagttcaaaaaacacaccaaagagtttc-attgagttgtcggaaactc 12800014  T
Q  198 tttctctctgctcc 211  Q
    ||||||||| ||||    
T  12800013 tttctctcttctcc 12800000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 26342069 - 26342008
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  26342069 tttccttcattcaaatccaat-agtttgtttcctccacttttgtggatttgtttcttttgatc 26342008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 3046435 - 3046374
Alignment:
Q  8 atctttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    |||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||| ||||    
T  3046435 atctttccttcattcaaatctaatgagtttgtttcctccacttttgtggatttgtttatttt 3046374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 10387586 - 10387651
Alignment:
Q  8 atctttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    |||||| ||||||||| |||||| |||||||||||||| ||||||||| |||||||||||||||||    
T  10387586 atcttttcttcattcaaatccaacgagtttgtttcctccacttttgtgaatttgtttcttttgatc 10387651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 27246781 - 27246842
Alignment:
Q  8 atctttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    ||||||| |||||||||||||||| ||||||||||||| ||||||||||||||| |||||||    
T  27246781 atctttctttcattcatatccaataagtttgtttcctccacttttgtggatttgcttctttt 27246842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 26286567 - 26286627
Alignment:
Q  151 agttcaaaaatcacaccaaagagtttctattaaattgtcgagaattctttctctctgctcc 211  Q
    ||||||||||||||||||||||||||||||| | |||||||||| ||||||||||| ||||    
T  26286567 agttcaaaaatcacaccaaagagtttctattgagttgtcgagaactctttctctcttctcc 26286627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 95 - 211
Target Start/End: Complemental strand, 3285225 - 3285112
Alignment:
Q  95 tgccgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgag 192  Q
    |||||| ||||||||||||| ||||||||||||||||     || || ||||  |||||||| |||||||| ||||||||||||||||| | |||| |||    
T  3285225 tgccgcgatttttgctaaaatagttacaaaatctcta-----atagaggactccactcagtttaaaaatcataccaaagagtttctattgagttgtggag 3285131  T
Q  193 aattctttctctctgctcc 211  Q
    || ||||||||||| ||||    
T  3285130 aactctttctctcttctcc 3285112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 6590248 - 6590307
Alignment:
Q  8 atctttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctt 67  Q
    ||||||| |||||||||||||||||| |||||||||||  ||||||||||||||||||||    
T  6590248 atctttctttcattcatatccaatgaatttgtttcctccccttttgtggatttgtttctt 6590307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 16373246 - 16373196
Alignment:
Q  20 ttcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttg 70  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  16373246 ttcacatccaatgagtttgtttcctctacttttgtggttttgtttcttttg 16373196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 2595548 - 2595438
Alignment:
Q  100 caatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaattc 197  Q
    |||||||||||||||||||| |||||||||  ||||||| || ||||  |||||||||||||| ||||| |||||||||| ||| | |||||| |||  |    
T  2595548 caatttttgctaaaacagttgcaaaatctc--tataaatagaggactccactcagttcaaaaaacacacgaaagagtttc-attgagttgtcgggaaccc 2595452  T
Q  198 tttctctctgctcc 211  Q
    ||||||||| ||||    
T  2595451 tttctctcttctcc 2595438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 3880826 - 3880765
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    |||| |||||||| || |||| ||||||||||||| |||||||||||||||||||||||||||    
T  3880826 tttcattcattcaaattcaat-agtttgtttcctccacttttgtggatttgtttcttttgatc 3880765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 4931085 - 4931024
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    |||| |||||||| ||||||| |||||||| |||| |||||||||||||||||||||||||||    
T  4931085 tttcattcattcaaatccaat-agtttgttacctccacttttgtggatttgtttcttttgatc 4931024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 8269158 - 8269097
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| ||||||||||| | |||||||||||||    
T  8269158 tttccttcattcaaatccaat-agtttgtttcctccacttttgtggaatcgtttcttttgatc 8269097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 12800248 - 12800187
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||    
T  12800248 tttccttcattcaaatctaat-agtttgtttccttcacttttgtggatttgtttcttttgatc 12800187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 23319775 - 23319741
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctc 45  Q
    |||||||||||||||||||||||||||||||||||    
T  23319775 tttccttcattcatatccaatgagtttgtttcctc 23319741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 44509759 - 44509805
Alignment:
Q  92 tgctgccgcaatttttgctaaaacagttacaaaatctctatataaat 138  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||    
T  44509759 tgctgtcgcaatttttgctaaaacagttaaaaaatttctatataaat 44509805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 2595661 - 2595624
Alignment:
Q  36 ttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    |||||||||| |||||||||||||||||||||||||||    
T  2595661 ttgtttcctccacttttgtggatttgtttcttttgatc 2595624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 26341934 - 26341870
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaa 160  Q
    |||||||||||| |||||||||||| ||||||||||||||| || ||||  ||| ||||||||||    
T  26341934 cgcaatttttgcgaaaacagttacagaatctctatataaatagaggacttcacttagttcaaaaa 26341870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 16373107 - 16373040
Alignment:
Q  110 taaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtt 175  Q
    |||||||||||||||||  ||||||||||  | ||||  ||||| |||||||||||||||||||||||    
T  16373107 taaaacagttacaaaattactatataaataaaggactccactcaattcaaaaatcacaccaaagagtt 16373040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 27239013 - 27238955
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttg 70  Q
    |||| |||||||| || |||| ||||||||||||| ||||||||||||||||||| ||||    
T  27239013 tttcattcattcaaattcaat-agtttgtttcctccacttttgtggatttgtttcgtttg 27238955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 9815120 - 9815174
Alignment:
Q  15 cttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    |||||||||||||||||||| |||||||||  |||| ||||  ||||||||||||    
T  9815120 cttcattcatatccaatgagcttgtttcctacacttatgtgcgtttgtttctttt 9815174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 10717045 - 10717099
Alignment:
Q  15 cttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    |||||||||||||||||||| |||||||||  |||| ||||  ||||||||||||    
T  10717045 cttcattcatatccaatgagcttgtttcctacacttatgtgcgtttgtttctttt 10717099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 42625821 - 42625882
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||| | ||||||| ||||| ||||||| |||| ||||||||| ||||||||||||    
T  42625821 tttccttcatttacatccaat-agtttatttcctccacttgtgtggatttatttcttttgatc 42625882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 23319628 - 23319534
Alignment:
Q  115 cagttacaaaatctctatataaattgaagact--actcagttcaaaaat--cacaccaaagagtttctattaaattgtcgagaattctttctctct 206  Q
    ||||||||||| ||| |||||||| |||| ||  ||||| |||||||||  |||||||||||||||| ||| | ||||||| |||| |||||||||    
T  23319628 cagttacaaaacctcaatataaatagaagtctccactcaattcaaaaatttcacaccaaagagtttc-attgagttgtcgataattatttctctct 23319534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 211
Target Start/End: Complemental strand, 15973459 - 15973365
Alignment:
Q  118 ttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaattctttctctctgctcc 211  Q
    ||||||||||||||||| |||  | ||||  |||||||||||||| ||||  |||||| ||||||||  |||||||||| ||||||| ||| ||||    
T  15973459 ttacaaaatctctatatgaataaatgactccactcagttcaaaaagcacatgaaagag-ttctattaggttgtcgagaactctttctatcttctcc 15973365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 99 - 211
Target Start/End: Original strand, 33300612 - 33300725
Alignment:
Q  99 gcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaatt 196  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||  |||||||||||||| |||||||||||||||| ||| |||||||| ||| |    
T  33300612 gcaatttttgctaaaacagttacaaaatctctatataaatagaggactccactcagttcaaaaaacacaccaaagagtttc-attgaattgtcgggaact 33300710  T
Q  197 ctttctctctgctcc 211  Q
    |||||||||| ||||    
T  33300711 ctttctctcttctcc 33300725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 38621435 - 38621321
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||  |||||||||||||| |||||||||||||||| ||| | |||||| |||     
T  38621435 cgcaatttttgctaaaacagttacaaaatctctatataaatagaggactccactcagttcaaaaaacacaccaaagagtttc-attgagttgtcgggaac 38621337  T
Q  196 tctttctctctgctcc 211  Q
    ||||||||||| ||||    
T  38621336 tctttctctcttctcc 38621321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 101 - 211
Target Start/End: Complemental strand, 20108075 - 20107963
Alignment:
Q  101 aatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaattct 198  Q
    |||||||||||||||||||| |||||||||||||||||  | ||||  ||||||||| ||||| ||||||||||| ||||||| | |||||||||| |||    
T  20108075 aatttttgctaaaacagttaaaaaatctctatataaatataggactctactcagttctaaaattacaccaaagagattctattgagttgtcgagaactct 20107976  T
Q  199 ttctctctgctcc 211  Q
    |||||||| ||||    
T  20107975 ttctctcttctcc 20107963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 99 - 212
Target Start/End: Original strand, 19798369 - 19798483
Alignment:
Q  99 gcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaatt 196  Q
    |||||||||||||||||||||||| ||||||||||||||| || ||||  ||||||||||||||  ||||||||||||||| ||| | |||||| ||| |    
T  19798369 gcaatttttgctaaaacagttacagaatctctatataaatagaggactccactcagttcaaaaaatacaccaaagagtttc-attgagttgtcgggaact 19798467  T
Q  197 ctttctctctgctcct 212  Q
    |||||||||| |||||    
T  19798468 ctttctctcttctcct 19798483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 25844483 - 25844368
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttc-aaaaatcacaccaaagagtttctattaaattgtcgagaa 194  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  |||| |||| ||||| |||||||||||||||| ||| | |||||| |||    
T  25844483 cgcaatttttgctaaaacagttacagaatctctatataaatagaggactccactcggttcaaaaaaacacaccaaagagtttc-attgagttgtcgggaa 25844385  T
Q  195 ttctttctctctgctcc 211  Q
     ||||||||||| ||||    
T  25844384 ctctttctctcttctcc 25844368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 16834202 - 16834088
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||| ||||||||||||||||||||||||||||||| || ||||  ||| |||||||| |  ||||||||||||||| ||| | |||||| |||     
T  16834202 cgcaattttggctaaaacagttacaaaatctctatataaatagaggactccacttagttcaaacaatacaccaaagagtttc-attgagttgtcgggaac 16834104  T
Q  196 tctttctctctgctcc 211  Q
    ||||||||||| ||||    
T  16834103 tctttctctcttctcc 16834088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 10136187 - 10136126
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  10136187 tttccttcattcaaatccaat-agtttgtttcctccacttttgtggatttgtttcttttgatc 10136126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 11807075 - 11807001
Alignment:
Q  8 atctttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttc-ttttgatctgatccac 81  Q
    ||||||| |||||||| |||||||||||||||||| || ||||||||||||||||||| ||||||||| ||||||    
T  11807075 atctttctttcattcaaatccaatgagtttgtttcatccacttttgtggatttgtttctttttgatcttatccac 11807001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 16648868 - 16648929
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  16648868 tttccttcattcaaatccaat-agtttgtttcctccacttttgtggatttgtttcttttgatc 16648929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 26926954 - 26927015
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  26926954 tttccttcattcaaatccaat-agtttgtttcctccacttttgtggatttgtttcttttgatc 26927015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 100 - 211
Target Start/End: Original strand, 47450594 - 47450706
Alignment:
Q  100 caatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaattc 197  Q
    ||||||||||||||||||||||| ||||||||||||||| || ||||  |||||||| ||||| |||| ||||||||||| ||| | || ||| ||| ||    
T  47450594 caatttttgctaaaacagttacagaatctctatataaatagaggactccactcagtttaaaaaacacatcaaagagtttc-attgagttatcgggaactc 47450692  T
Q  198 tttctctctgctcc 211  Q
    ||||||||| ||||    
T  47450693 tttctctcttctcc 47450706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 16036292 - 16036232
Alignment:
Q  151 agttcaaaaatcacaccaaagagtttctattaaattgtcgagaattctttctctctgctcc 211  Q
    ||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| ||||    
T  16036292 agttcaaaaattacaccaaagagtttctattaagttgtcgagaactctttctctcttctcc 16036232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 16649003 - 16649117
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||| ||||| ||||||| ||||||||||||||| || ||||  |||||||||||||| ||||||||| |||||| ||| | |||||| |||     
T  16649003 cgcaatttttgttaaaatagttacagaatctctatataaatagaggactccactcagttcaaaaaacacaccaaaaagtttc-attgagttgtcgggaac 16649101  T
Q  196 tctttctctctgctcc 211  Q
    | ||||||||| ||||    
T  16649102 tttttctctcttctcc 16649117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 8138484 - 8138418
Alignment:
Q  8 atctttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatct 74  Q
    ||||||||||| | |||||||||||| ||||||||||| |||||||||| ||| |||||||||||||    
T  8138484 atctttccttcgtccatatccaatgaatttgtttcctccacttttgtggttttatttcttttgatct 8138418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 19798233 - 19798294
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||| ||| | |||||||||||||||||||||||||||||||||||||||    
T  19798233 tttccttcattcaaatctaat-attttgtttcctctacttttgtggatttgtttcttttgatc 19798294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 51040759 - 51040824
Alignment:
Q  15 cttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatctgatccac 81  Q
    ||||||||| ||||||| ||||||||||||| ||||||||||||||||||| |||||||| ||||||    
T  51040759 cttcattcaaatccaat-agtttgtttcctccacttttgtggatttgtttcatttgatcttatccac 51040824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 47450457 - 47450517
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgat 72  Q
    ||||||||||||| ||||||| ||||||||||||| ||||| ||||||||||||||||||||    
T  47450457 tttccttcattcaaatccaat-agtttgtttcctccactttcgtggatttgtttcttttgat 47450517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 8138349 - 8138275
Alignment:
Q  94 ctgccgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacac 166  Q
    |||| |||| ||||||||||||||||||||||||||||||||||| ||  |||  ||||||||||||||| ||||    
T  8138349 ctgctgcaacttttgctaaaacagttacaaaatctctatataaatagagaacttcactcagttcaaaaattacac 8138275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 10140955 - 10140894
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    |||||||||||||  |||||| |||||||| |||| |||||||||||||||||||||||||||    
T  10140955 tttccttcattcaagtccaat-agtttgttacctccacttttgtggatttgtttcttttgatc 10140894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 16834337 - 16834276
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||| ||| | ||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  16834337 tttcctttatttaaatccaat-agtttgtttcctctacttttgtggatttgtttcctttgatc 16834276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 38621570 - 38621509
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    |||||||| |||| ||||||| ||||||||||||| |||| ||||||||||||||||||||||    
T  38621570 tttccttcgttcaaatccaat-agtttgtttcctccacttctgtggatttgtttcttttgatc 38621509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 39199995 - 39200056
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||| ||| ||||||||||||| |||||||| ||||||||||||||||||    
T  39199995 tttccttcattcaaatcaaat-agtttgtttcctccacttttgtcgatttgtttcttttgatc 39200056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 39200124 - 39200243
Alignment:
Q  92 tgctgccgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtc 189  Q
    ||||| |||||||||||||||||||| |||| ||||||||||||||| || ||||  |||  ||| ||||| |||||||||||||||| ||| | |||||    
T  39200124 tgctgtcgcaatttttgctaaaacagctacataatctctatataaatagaggactccacttggtttaaaaa-cacaccaaagagtttc-attgagttgtc 39200221  T
Q  190 gagaattctttctctctgctcc 211  Q
    | |||  |||||||||| ||||    
T  39200222 gggaaccctttctctcttctcc 39200243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 10136052 - 10135988
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaa 160  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  ||| ||||||||||    
T  10136052 cgcaatttttgctaaaacagttacagaatctctatataaatagaggactccacttagttcaaaaa 10135988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 26927089 - 26927153
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaa 160  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  ||| ||||||||||    
T  26927089 cgcaatttttgctaaaacagttacagaatctctatataaatagaggactccacttagttcaaaaa 26927153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 46697193 - 46697132
Alignment:
Q  8 atctttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    |||||||||||||||||||||||| |||||||||| |||| ||||| || ||||||| ||||    
T  46697193 atctttccttcattcatatccaattagtttgtttcatctaattttgggggtttgtttatttt 46697132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 7882659 - 7882599
Alignment:
Q  151 agttcaaaaatcacaccaaagagtttctattaaattgtcgagaattctttctctctgctcc 211  Q
    |||||||| |||||| ||||||||||||||| | |||||||||| ||||||||||| ||||    
T  7882659 agttcaaagatcacatcaaagagtttctattgagttgtcgagaactctttctctcttctcc 7882599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 51040890 - 51040930
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaat 138  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  51040890 cgcaatttttgctaaaacagttacagaatctctatataaat 51040930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 25844614 - 25844557
Alignment:
Q  15 cttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||| ||||||| |||||| |||||| ||||||||||||||||||| |||||||    
T  25844614 cttcattcaaatccaat-agtttggttcctccacttttgtggatttgtttcctttgatc 25844557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 10140820 - 10140780
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaat 138  Q
    ||||||||||||||||||||||||| ||||||| |||||||    
T  10140820 cgcaatttttgctaaaacagttacagaatctctgtataaat 10140780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 20108197 - 20108157
Alignment:
Q  29 aatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    ||||||||||||||||| ||||||| |||||||||||||||    
T  20108197 aatgagtttgtttcctccacttttggggatttgtttctttt 20108157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 206
Target Start/End: Complemental strand, 11806961 - 11806878
Alignment:
Q  125 atctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaattctttctctct 206  Q
    |||||||||||||| || ||||  ||||| ||||||||| || |||||||||||||||| | || | ||||| | |||||||||    
T  11806961 atctctatataaatagaggactccactcatttcaaaaattacgccaaagagtttctattgagttattgagaactatttctctct 11806878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 2e-29; HSPs: 40)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 101 - 211
Target Start/End: Original strand, 19994768 - 19994880
Alignment:
Q  101 aatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaattct 198  Q
    |||||||||||||||||||||||||||||||||||||| || ||||  ||||||||||||||| |||||||||||||| |||| | |||| ||||| |||    
T  19994768 aatttttgctaaaacagttacaaaatctctatataaatagaggactccactcagttcaaaaattacaccaaagagtttatattgagttgtagagaactct 19994867  T
Q  199 ttctctctgctcc 211  Q
    |||||||| ||||    
T  19994868 ttctctcttctcc 19994880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 95 - 201
Target Start/End: Original strand, 22694730 - 22694838
Alignment:
Q  95 tgccgcaatttttgctaaaacagttacaaaatctctatataaattgaaga--ctactcagttcaaaaatcacaccaaagagtttctattaaattgtcgag 192  Q
    |||||||||||||||||||||||||||||||||||||||||||  || ||  | ||| ||||||||||||||||||||||||||||||| | ||||||||    
T  22694730 tgccgcaatttttgctaaaacagttacaaaatctctatataaacagaggattccactaagttcaaaaatcacaccaaagagtttctattgacttgtcgag 22694829  T
Q  193 aattctttc 201  Q
    || ||||||    
T  22694830 aactctttc 22694838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 100 - 211
Target Start/End: Original strand, 20747672 - 20747783
Alignment:
Q  100 caatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaattc 197  Q
    |||||||||||||||||||||| |||||||||||||||| || ||||  |||||||| |||||||||||||||||||||| ||| | |||||| ||| ||    
T  20747672 caatttttgctaaaacagttaccaaatctctatataaatagaggactccactcagttaaaaaatcacaccaaagagtttc-attgagttgtcg-gaactc 20747769  T
Q  198 tttctctctgctcc 211  Q
    ||||||||| ||||    
T  20747770 tttctctcttctcc 20747783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 101 - 211
Target Start/End: Complemental strand, 17600092 - 17599980
Alignment:
Q  101 aatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaattct 198  Q
    ||||||| |||||| | |||||||||||||| |||||| || ||||  |||||||||||||||||||| |||||||||||||| | ||||||| || |||    
T  17600092 aatttttactaaaaaaattacaaaatctctaaataaatagaggacttcactcagttcaaaaatcacactaaagagtttctattgagttgtcgaaaactct 17599993  T
Q  199 ttctctctgctcc 211  Q
    |||||||| ||||    
T  17599992 ttctctcttctcc 17599980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 11534068 - 11534155
Alignment:
Q  92 tgctgccgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttc 177  Q
    |||| |||||||||||||||||||||||||| ||||||| ||||||| || ||||  |||||||||||||| ||||||||||||||||    
T  11534068 tgctaccgcaatttttgctaaaacagttacagaatctctttataaatagaggacttcactcagttcaaaaaacacaccaaagagtttc 11534155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 14509700 - 14509586
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||||||||||| ||||||||||||| ||||||| || ||||  ||| |||||||||| |||||||||||||||| ||| | |||||| |||     
T  14509700 cgcaatttttgctaaaacatttacaaaatctctttataaatagaggactccactaagttcaaaaaacacaccaaagagtttc-attgagttgtcgggaac 14509602  T
Q  196 tctttctctctgctcc 211  Q
    ||||||||||| ||||    
T  14509601 tctttctctcttctcc 14509586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 2699455 - 2699575
Alignment:
Q  92 tgctgccgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtc 189  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||| || || |  |||||||||||||| ||||||||| |||||| ||| | ||||     
T  2699455 tgctgtcgcaatttttactaaaacagttacaaaatctctatataaatagaggaattcactcagttcaaaaaacacaccaaatagtttc-atttagttgtt 2699553  T
Q  190 gagaattctttctctctgctcc 211  Q
    | ||| ||||||||||| ||||    
T  2699554 gggaactctttctctcttctcc 2699575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 11559584 - 11559665
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttc 177  Q
    ||||||||||||||||||||||||| ||||||| ||||||| || ||||  |||||||||||||| ||||||||||||||||    
T  11559584 cgcaatttttgctaaaacagttacagaatctctttataaatagaggactccactcagttcaaaaaacacaccaaagagtttc 11559665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 6407229 - 6407343
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  ||||| |||||||| |||| ||||||||||| ||| | |||| | |||     
T  6407229 cgcaatttttgctaaaacagttacagaatctctatataaatagaggactccactcaattcaaaaaacacatcaaagagtttc-attgagttgttgggaac 6407327  T
Q  196 tctttctctctgctcc 211  Q
    ||||||||||| ||||    
T  6407328 tctttctctcttctcc 6407343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 4156720 - 4156828
Alignment:
Q  99 gcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaatt 196  Q
    |||||||||||||||||||||||| ||||| |||||||||  | ||||  ||||||||||||||| |||||||| |||||| ||| | |||||| ||| |    
T  4156720 gcaatttttgctaaaacagttacagaatctatatataaataaaggactccactcagttcaaaaattacaccaaaaagtttc-attgagttgtcgggaact 4156818  T
Q  197 ctttctctct 206  Q
    ||||||||||    
T  4156819 ctttctctct 4156828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 5856843 - 5856782
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  5856843 tttccttcattcaaatccaat-agtttgtttcctccacttttgtggatttgtttcttttgatc 5856782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 33687010 - 33687129
Alignment:
Q  92 tgctgccgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtc 189  Q
    ||||| ||||||||||| ||||||| ||||| ||||||||||||||| || ||||  |||||||||||||| |||||||||||||||| ||| | |||||    
T  33687010 tgctgtcgcaatttttgttaaaacaattacagaatctctatataaatagaggactccactcagttcaaaaa-cacaccaaagagtttc-attgagttgtc 33687107  T
Q  190 gagaattctttctctctgctcc 211  Q
    | ||| ||||| ||||| ||||    
T  33687108 gggaactctttttctcttctcc 33687129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 11613138 - 11613203
Alignment:
Q  8 atctttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||| |||||||| || |||||||||||||||||| |||||||||||||| ||||||||||||    
T  11613138 atctttcattcattcaaattcaatgagtttgtttcctccacttttgtggatttatttcttttgatc 11613203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 203
Target Start/End: Complemental strand, 17914314 - 17914206
Alignment:
Q  97 ccgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaa 194  Q
    |||||||||||||||||| ||||||||||||||||||| ||| || ||||   |||||||||||||||| ||||||  |||||||||   || |||||||    
T  17914314 ccgcaatttttgctaaaaaagttacaaaatctctatattaatagaggactcccctcagttcaaaaatcaaaccaaattgtttctattgtgttttcgagaa 17914215  T
Q  195 ttctttctc 203  Q
     ||||||||    
T  17914214 ctctttctc 17914206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 22694607 - 22694664
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttt 68  Q
    ||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||    
T  22694607 tttccttcattcaaatccaatgagtttgtttcctccacttttgtagatttgtttcttt 22694664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 202
Target Start/End: Original strand, 25313823 - 25313926
Alignment:
Q  100 caatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaattc 197  Q
    ||||||||||||||||||||||| ||||||||||||||| || ||||  ||| ||||||||||  ||||||||||||||| ||| | |||||| ||| ||    
T  25313823 caatttttgctaaaacagttacagaatctctatataaatagatgactcaacttagttcaaaaaatacaccaaagagtttc-attgagttgtcgggaactc 25313921  T
Q  198 tttct 202  Q
    |||||    
T  25313922 tttct 25313926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 202
Target Start/End: Original strand, 26201317 - 26201420
Alignment:
Q  100 caatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaattc 197  Q
    ||||||||||||||||||||||| ||||||||||||||| || ||||  ||| ||||||||||  ||||||||||||||| ||| | |||||| ||| ||    
T  26201317 caatttttgctaaaacagttacagaatctctatataaatagatgactcaacttagttcaaaaaatacaccaaagagtttc-attgagttgtcgggaactc 26201415  T
Q  198 tttct 202  Q
    |||||    
T  26201416 tttct 26201420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 16835543 - 16835640
Alignment:
Q  115 cagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaattctttctctctgctcc 211  Q
    |||||||| ||||||||||||||| || ||||  |||||||||||||| |||||||||||||||| ||| | |||||| ||| ||||||||||| ||||    
T  16835543 cagttacagaatctctatataaatagaggactccactcagttcaaaaaacacaccaaagagtttc-attgagttgtcgggaactctttctctcttctcc 16835640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 6407094 - 6407155
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| | |||||||||||||||||||||||||    
T  6407094 tttccttcattcaaatccaat-agtttgtttcctccatttttgtggatttgtttcttttgatc 6407155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 8748622 - 8748561
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| || |||| ||||||||||||| |||||||||||||||||||||||||||    
T  8748622 tttccttcattcaaattcaat-agtttgtttcctccacttttgtggatttgtttcttttgatc 8748561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 211
Target Start/End: Complemental strand, 11428685 - 11428573
Alignment:
Q  101 aatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttc-aaaaatcacaccaaagagtttctattaaattgtcgagaattc 197  Q
    |||||||||||||| ||||||||||||||||||||||| || ||||  ||||||||| ||||| |||| |||| |||||| ||| | |||||| ||| ||    
T  11428685 aatttttgctaaaagagttacaaaatctctatataaatagaggactccactcagttcaaaaaaacacatcaaaaagtttc-attgagttgtcgggaactc 11428587  T
Q  198 tttctctctgctcc 211  Q
    ||||||||| ||||    
T  11428586 tttctctcttctcc 11428573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 11559449 - 11559510
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| |||| ||||||||||||||||||||||    
T  11559449 tttccttcattcaaatccaat-agtttgtttcctccacttgtgtggatttgtttcttttgatc 11559510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 16835397 - 16835458
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| |||||||| |||| |||||||||||||||||||||||||||    
T  16835397 tttccttcattcaaatccaat-agtttgttacctccacttttgtggatttgtttcttttgatc 16835458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 20747535 - 20747596
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| || |||| ||||||||||||| |||||||||||||||||||||||||||    
T  20747535 tttccttcattcaaattcaat-agtttgtttcctccacttttgtggatttgtttcttttgatc 20747596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 11533943 - 11534000
Alignment:
Q  15 cttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||| ||||||| ||||||||||||| |||| ||||||||||||||||||||||    
T  11533943 cttcattcaaatccaat-agtttgtttcctccacttgtgtggatttgtttcttttgatc 11534000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 17963792 - 17963849
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    ||||||||||||| ||||||| ||||||||||||| ||| |||||||||||||||||||    
T  17963792 tttccttcattcaaatccaat-agtttgtttcctccactattgtggatttgtttctttt 17963849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 5856708 - 5856644
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaaga--ctactcagttcaaaaa 160  Q
    ||||||||||||||||| ||||||||||||||||||||||| || ||  |||||||||| |||||    
T  5856708 cgcaatttttgctaaaatagttacaaaatctctatataaatagaggactctactcagttaaaaaa 5856644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 17914453 - 17914392
Alignment:
Q  8 atctttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    |||||||||||||||| ||| |||||||||| |||||  |||||||||||||| ||||||||    
T  17914453 atctttccttcattcaaatctaatgagtttgattccttcacttttgtggatttatttctttt 17914392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 12405595 - 12405647
Alignment:
Q  8 atctttccttcattcatatccaatgagtttgtttcctctacttttgtggattt 60  Q
    |||||||| ||||||| ||||||||||||||||||||| | ||||||||||||    
T  12405595 atctttccatcattcaaatccaatgagtttgtttcctccatttttgtggattt 12405647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 8748485 - 8748423
Alignment:
Q  100 caatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaa 160  Q
    ||||||||||||||||||||||| ||||||||||||||| || ||||  ||| ||||||||||    
T  8748485 caatttttgctaaaacagttacagaatctctatataaatagaggactccacttagttcaaaaa 8748423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 11428800 - 11428762
Alignment:
Q  35 tttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  11428800 tttgtttcctccacttttgtggatttgtttcttttgatc 11428762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 11569929 - 11569991
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| |||||||   ||||||||||| ||||  |||||||||||||||||||||    
T  11569929 tttccttcattcaaatccaatagttttgtttcctccacttgggtggatttgtttcttttgatc 11569991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 206
Target Start/End: Original strand, 12405754 - 12405839
Alignment:
Q  123 aaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaattctttctctct 206  Q
    |||||| ||||||||| ||| |||  ||||| |||||||| ||||||||| |||||| ||| | |||||||||| |||||||||||    
T  12405754 aaatctttatataaatagaaaactccactcaattcaaaaaacacaccaaaaagtttcaattgagttgtcgagaactctttctctct 12405839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 14509835 - 14509778
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    ||||| ||||||| ||| ||| ||||||||||||| |||||||||||||||||||||||    
T  14509835 tttccatcattcaaatctaat-agtttgtttcctccacttttgtggatttgtttctttt 14509778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 33686881 - 33686942
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    |||| |||||||| ||| ||| ||||||||||||| |||||||||||| ||||||||||||||    
T  33686881 tttcattcattcaaatctaat-agtttgtttcctccacttttgtggatctgtttcttttgatc 33686942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 19994628 - 19994677
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggattt 60  Q
    ||||||||||||| |||||||||||||||||||||   ||||||||||||    
T  19994628 tttccttcattcaaatccaatgagtttgtttcctcatattttgtggattt 19994677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 4156573 - 4156632
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttga 71  Q
    ||||||| ||||| ||||||| ||||||||||||| | |||||||||||||||| ||||||    
T  4156573 tttcctttattcaaatccaat-agtttgtttcctccatttttgtggatttgtttattttga 4156632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 17963927 - 17963967
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaat 138  Q
    ||||||||||| ||||||||||||| |||||||||||||||    
T  17963927 cgcaatttttggtaaaacagttacagaatctctatataaat 17963967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 11570138 - 11570193
Alignment:
Q  124 aatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttc 177  Q
    ||||||| ||||||| || ||||  |||||||||||||| ||||||||||||||||    
T  11570138 aatctctttataaatagaggactccactcagttcaaaaaacacaccaaagagtttc 11570193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 17600233 - 17600197
Alignment:
Q  8 atctttccttcattcatatccaatgagtttgtttcct 44  Q
    |||||||||||||||||||||||| | ||||||||||    
T  17600233 atctttccttcattcatatccaataaatttgtttcct 17600197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 9e-29; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 37263932 - 37264046
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  |||||||||||||| |||||||||||||||| ||| |||||||| |||     
T  37263932 cgcaatttttgctaaaacagttacagaatctctatataaatagaggactccactcagttcaaaaaacacaccaaagagtttc-attgaattgtcgggaac 37264030  T
Q  196 tctttctctctgctcc 211  Q
    ||||||||||| ||||    
T  37264031 tctttctctcttctcc 37264046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 37259232 - 37259346
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  |||||||||||||| |||||||||||||||| ||| | |||||| |||     
T  37259232 cgcaatttttgctaaaacagttacacaatctctatataaatagaggactccactcagttcaaaaaacacaccaaagagtttc-attgagttgtcgggaac 37259330  T
Q  196 tctttctctctgctcc 211  Q
    ||||||||||| ||||    
T  37259331 tctttctctcttctcc 37259346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 31274241 - 31274127
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  |||||||||||||| |||||||||||||||| ||| | ||||||  ||     
T  31274241 cgcaatttttgctaaaacagttacagaatctctatataaatagaggactccactcagttcaaaaaacacaccaaagagtttc-attgagttgtcggaaac 31274143  T
Q  196 tctttctctctgctcc 211  Q
    ||||||||||| ||||    
T  31274142 tctttctctcttctcc 31274127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 6943507 - 6943392
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||| |||||||||| ||||||||||| |||||||   | ||||  ||||||||||||||||||| ||||||||||||||| | ||||||||||     
T  6943507 cgcaattttcgctaaaacagctacaaaatctcaatataaacataggactctactcagttcaaaaatcacatcaaagagtttctattgagttgtcgagaac 6943408  T
Q  196 tctttctctctgctcc 211  Q
    |||||| |||| ||||    
T  6943407 tctttcgctcttctcc 6943392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 16421769 - 16421655
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  | |||||||||||| |||||||||||||||| ||| | ||||||  ||     
T  16421769 cgcaatttttgctaaaacagttacagaatctctatataaatagaggactccaatcagttcaaaaaacacaccaaagagtttc-attgagttgtcggaaac 16421671  T
Q  196 tctttctctctgctcc 211  Q
    ||||||||||| ||||    
T  16421670 tctttctctcttctcc 16421655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 103 - 211
Target Start/End: Original strand, 13065177 - 13065287
Alignment:
Q  103 tttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaattcttt 200  Q
    |||||||||| |||||||||||||||||||||||||  | ||||  ||| |||||||||| |||||||||||||||||||| | ||||||| || |||||    
T  13065177 tttttgctaatacagttacaaaatctctatataaatacaggactccacttagttcaaaaaacacaccaaagagtttctattgagttgtcgaaaaatcttt 13065276  T
Q  201 ctctctgctcc 211  Q
     ||||| ||||    
T  13065277 atctcttctcc 13065287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 98 - 206
Target Start/End: Complemental strand, 55252393 - 55252284
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  |||||||||||||| ||||||||||| |||| ||| | |||||| ||      
T  55252393 cgcaatttttgctaaaacagttacagaatctctatataaatagaggactccactcagttcaaaaaacacaccaaagaatttc-attgagttgtcgggagc 55252295  T
Q  196 tctttctctct 206  Q
    |||||||||||    
T  55252294 tctttctctct 55252284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 5270657 - 5270726
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatctgatccac 81  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  5270657 tttccttcattcaaatccaat-agtttgtttcctccacttttgtggatttgtttcttttgatcttatccac 5270726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 13060189 - 13060074
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttc-aaaaatcacaccaaagagtttctattaaattgtcgagaa 194  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||  ||| ||||| ||||| ||||  |||||||||| ||| |||||||| |||    
T  13060189 cgcaatttttgctaaaacagttacaaaatctctatataaatagaggactccactgagttcaaaaaaccacaaaaaagagtttc-atttaattgtcgggaa 13060091  T
Q  195 ttctttctctctgctcc 211  Q
     ||||||||||| ||||    
T  13060090 ctctttctctcttctcc 13060074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 5927451 - 5927512
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  5927451 tttccttcattcaaatccaat-agtttgtttcctccacttttgtggatttgtttcttttgatc 5927512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 31728599 - 31728660
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  31728599 tttccttcattcaaatccaat-agtttgtttcctccacttttgtggatttgtttcttttgatc 31728660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 31766734 - 31766673
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  31766734 tttccttcattcaaatccaat-agtttgtttcctccacttttgtggatttgtttcttttgatc 31766673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 51698649 - 51698568
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttc 177  Q
    ||||||||||||||||||| ||||| ||||||||||||||| || ||||  |||||||||| ||| ||||||||||||||||    
T  51698649 cgcaatttttgctaaaacaattacagaatctctatataaatagatgactccactcagttcataaaacacaccaaagagtttc 51698568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 51698784 - 51698723
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  51698784 tttccttcattcaaatccaat-agtttgtttcctccacttttgtggatttgtttcttttgatc 51698723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 19540547 - 19540661
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||| ||||||||||||||||||||||||||||| || ||||  ||||||||||||||  | || |||||||||| ||| | ||||||  ||     
T  19540547 cgcaatttttgataaaacagttacaaaatctctatataaatagaggactccactcagttcaaaaaataaactaaagagtttc-attgagttgtcggcaac 19540645  T
Q  196 tctttctctctgctcc 211  Q
    ||||||||||| ||||    
T  19540646 tctttctctcttctcc 19540661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 32220935 - 32221049
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    |||||||| |||||||||||||||| ||||||||||||||| || ||||  ||||||||||||||  |||||||| |||||| ||| | ||||||  ||     
T  32220935 cgcaatttatgctaaaacagttacataatctctatataaatagaggactccactcagttcaaaaaatacaccaaaaagtttc-attgagttgtcggaaac 32221033  T
Q  196 tctttctctctgctcc 211  Q
    ||||||||||| ||||    
T  32221034 tctttctctcttctcc 32221049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 98 - 206
Target Start/End: Original strand, 12823256 - 12823365
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    |||||||||||||||||||||| || ||||||||||| ||| ||| |||  |||||||||||||| ||||||||||| |||| ||| | ||||||  ||     
T  12823256 cgcaatttttgctaaaacagttgcagaatctctatatcaatagaaaacttcactcagttcaaaaaacacaccaaagaatttc-attgagttgtcggtaac 12823354  T
Q  196 tctttctctct 206  Q
    |||||||||||    
T  12823355 tctttctctct 12823365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 8694575 - 8694514
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| ||||||||| |||||||||||||||||    
T  8694575 tttccttcattcaaatccaat-agtttgtttcctccacttttgtgaatttgtttcttttgatc 8694514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 29349445 - 29349514
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatctgatccac 81  Q
    ||||||||||||| ||||||| | ||||||||||| ||||||||| |||||||||||||||||| ||||||    
T  29349445 tttccttcattcaaatccaataa-tttgtttcctccacttttgtgaatttgtttcttttgatcttatccac 29349514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 33468235 - 33468296
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| || |||| ||||||||||||| |||||||||||||||||||||||||||    
T  33468235 tttccttcattcaaattcaat-agtttgtttcctccacttttgtggatttgtttcttttgatc 33468296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 211
Target Start/End: Original strand, 33468373 - 33468485
Alignment:
Q  101 aatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttc-aaaaatcacaccaaagagtttctattaaattgtcgagaattc 197  Q
    |||||||||||||||||||||| ||||| ||||||||| || ||||  ||||||||| ||||| | |||||||||||||| ||| | |||||| ||| ||    
T  33468373 aatttttgctaaaacagttacagaatctttatataaatagaggactccactcagttcaaaaaaacgcaccaaagagtttc-attgagttgtcgggaactc 33468471  T
Q  198 tttctctctgctcc 211  Q
    ||||||||| ||||    
T  33468472 tttctctcttctcc 33468485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 37263797 - 37263858
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| |||||| |||||| |||||||||||||||||||||||||||    
T  37263797 tttccttcattcaaatccaat-agtttggttcctccacttttgtggatttgtttcttttgatc 37263858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 6943641 - 6943580
Alignment:
Q  8 atctttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||| |||  ||||||||    
T  6943641 atcttcccttcattcatatccaatgagtttgtttcctcaacttttgtgtattcttttctttt 6943580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 8694440 - 8694376
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaa 160  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||  ||| ||||||||||    
T  8694440 cgcaatttttgctaaaacagttacaaaatctctatataaatagaggactccacttagttcaaaaa 8694376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 39216333 - 39216394
Alignment:
Q  8 atctttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    ||||||||||  ||||||| |||||||||||||||||  |||||||||||||||||||||||    
T  39216333 atctttccttggttcatattcaatgagtttgtttcctacacttttgtggatttgtttctttt 39216394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 32081537 - 32081616
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttc 177  Q
    |||||||| |||||||||||||||| ||||||  ||||||| |||||||  |||||||||||||| ||||||||| ||||||    
T  32081537 cgcaatttatgctaaaacagttacagaatctc--tataaatagaagactccactcagttcaaaaaacacaccaaaaagtttc 32081616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 13065052 - 13065105
Alignment:
Q  15 cttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    ||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  13065052 cttcattcaaatc-aatgagtttgtttcctccacttttgtggatttgtttctttt 13065105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 16421904 - 16421843
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||| ||| ||||||||||||| ||||||| |||||||||||||||||||    
T  16421904 tttccttcattcaaatcaaat-agtttgtttcctccacttttgaggatttgtttcttttgatc 16421843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 211
Target Start/End: Complemental strand, 31269726 - 31269638
Alignment:
Q  124 aatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaattctttctctctgctcc 211  Q
    ||||||||||||||| || ||||  |||||||||||||| |||||||||||||||| ||| | |||||| ||| ||||||||||| ||||    
T  31269726 aatctctatataaatagaggactccactcagttcaaaaaacacaccaaagagtttc-attgagttgtcgggaactctttctctcttctcc 31269638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 31274376 - 31274315
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| |||||| |||||| | |||||||||||||||||||||||||    
T  31274376 tttccttcattcaaatccaat-agtttggttcctccatttttgtggatttgtttcttttgatc 31274315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 37259097 - 37259158
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||| ||||| ||||||| |||||| |||||| |||||||||||||||||||||||||||    
T  37259097 tttcctttattcaaatccaat-agtttggttcctccacttttgtggatttgtttcttttgatc 37259158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 5270792 - 5270856
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaa 160  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  ||| ||||||||||    
T  5270792 cgcaatttttgctaaaacagttacagaatctctatataaatagaggactccacttagttcaaaaa 5270856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 16955184 - 16955123
Alignment:
Q  8 atctttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    ||||||||||||||||| || ||| |||||||||| || ||||||||||||||||| |||||    
T  16955184 atctttccttcattcatgtcaaattagtttgtttcatccacttttgtggatttgttactttt 16955123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 31766599 - 31766559
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaat 138  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  31766599 cgcaatttttgctaaaacagttacagaatctctatataaat 31766559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 12823123 - 12823182
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||  ||||||||||||||||||    
T  12823123 tttccttcattcaaatccaat-agtttgtttcctccacttttg--gatttgtttcttttgatc 12823182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 13060324 - 13060267
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    ||||||||||||| ||||||| | ||||||||||| |||||||| ||||||||||||||    
T  13060324 tttccttcattcaaatccaat-actttgtttcctccacttttgttgatttgtttctttt 13060267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 16948856 - 16948803
Alignment:
Q  13 tccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttct 66  Q
    |||||||| |||||||||| |||||||||| |  ||||||||||||||||||||    
T  16948856 tccttcatccatatccaattagtttgtttcattcacttttgtggatttgtttct 16948803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 19906968 - 19906904
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaa 160  Q
    ||||||| ||||||||||| ||||||||||||||||||||| || ||||  |||||||| |||||    
T  19906968 cgcaattgttgctaaaacaattacaaaatctctatataaatagaggactccactcagtttaaaaa 19906904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 31728734 - 31728774
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaat 138  Q
    |||||||||||| |||||||||||| |||||||||||||||    
T  31728734 cgcaatttttgccaaaacagttacagaatctctatataaat 31728774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 19907106 - 19907042
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctac---ttttgtggatttgtttcttttgatc 73  Q
    |||||||| |||| ||||||| ||||||||||||| ||   |||||||||||||||||||||||||    
T  19907106 tttccttcgttcaaatccaat-agtttgtttcctccaccacttttgtggatttgtttcttttgatc 19907042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 33462587 - 33462652
Alignment:
Q  11 tttccttcattcatatccaatga---gtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| |   ||||  ||||| ||||||||||||||||||||||||||||    
T  33462587 tttccttcattcaaatccaataatttgtttccttcctttacttttgtggatttgtttcttttgatc 33462652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 33462726 - 33462846
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact-------actcagttcaaaaat-cacaccaaagagtttctattaaattgtc 189  Q
    ||||||||||||||||||| ||| | ||||| |||||||||  | ||||       ||||||||||||||  |||||||||||||||| ||| | |||||    
T  33462726 cgcaatttttgctaaaacaattatagaatctttatataaataaaggactccactccactcagttcaaaaaaacacaccaaagagtttc-attgagttgtc 33462824  T
Q  190 gagaattctttctctctgctcc 211  Q
    ||||| ||||||||||| ||||    
T  33462825 gagaactctttctctcttctcc 33462846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 23093971 - 23093925
Alignment:
Q  8 atctttccttcattcatatccaatgagtttgtttcctctacttttgt 54  Q
    ||||||| ||| ||||||| |||||||||||||||||| ||||||||    
T  23093971 atctttctttctttcatattcaatgagtttgtttcctccacttttgt 23093925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 32220800 - 32220861
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||| |||| |||| ||||||  | |||||||||||||||||||||||||    
T  32220800 tttccttcattcaaatctaatg-gtttctttccttcatttttgtggatttgtttcttttgatc 32220861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 23093835 - 23093752
Alignment:
Q  95 tgccgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagttt 176  Q
    ||||||||||||   |||| | ||||||||| ||||| |||||| || ||||  |||||||||||||| |||| ||||||||||    
T  23093835 tgccgcaattttaattaaaccggttacaaaacctctaaataaatagaggactccactcagttcaaaaaacacatcaaagagttt 23093752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 32081423 - 32081455
Alignment:
Q  33 agtttgtttcctctacttttgtggatttgtttc 65  Q
    ||||||||||||| |||||||||||||||||||    
T  32081423 agtttgtttcctccacttttgtggatttgtttc 32081455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 4791 - 4677
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  |||||||||||||| |||||||||||||||| ||| | |||||| |||     
T  4791 cgcaatttttgctaaaacagttacagaatctctatataaatagatgactccactcagttcaaaaaacacaccaaagagtttc-attgagttgtcgggaac 4693  T
Q  196 tctttctctctgctcc 211  Q
    ||||||||||| ||||    
T  4692 tctttctctcttctcc 4677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 100 - 202
Target Start/End: Original strand, 443313 - 443416
Alignment:
Q  100 caatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaattc 197  Q
    ||||||||||||||||||||||| |||||||||| |||| || ||||  |||||||||||||| |||||||||||||||| ||| | |||||| ||| ||    
T  443313 caatttttgctaaaacagttacagaatctctatacaaatagaggactccactcagttcaaaaaacacaccaaagagtttc-attgagttgtcgggaactc 443411  T
Q  198 tttct 202  Q
    |||||    
T  443412 tttct 443416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 4922 - 4865
Alignment:
Q  15 cttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||| ||||||| |||||| |||||| ||||||||||||||||||| |||||||    
T  4922 cttcattcaaatccaat-agtttggttcctccacttttgtggatttgtttcctttgatc 4865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 9e-26; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 95 - 211
Target Start/End: Original strand, 12965252 - 12965369
Alignment:
Q  95 tgccgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgag 192  Q
    |||||||||||||| |||||||||||||||||||||||||||||  ||||||  ||||||||||||||| |||| ||||||||| |||| | |||||| |    
T  12965252 tgccgcaatttttgttaaaacagttacaaaatctctatataaataaaagactccactcagttcaaaaattacacaaaagagttt-tattgagttgtcggg 12965350  T
Q  193 aattctttctctctgctcc 211  Q
    || ||||||||||| ||||    
T  12965351 aactctttctctcttctcc 12965369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 757732 - 757846
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||  |||  |||||| ||||||| |||||||||||||||| ||| | |||||| ||||    
T  757732 cgcaatttttgctaaaacagttacataatctctatataaatagagaactccactcagctcaaaaaacacaccaaagagtttc-attgagttgtcgggaat 757830  T
Q  196 tctttctctctgctcc 211  Q
    ||||||||||| ||||    
T  757831 tctttctctcttctcc 757846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 23660831 - 23660946
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttc-aaaaatcacaccaaagagtttctattaaattgtcgagaa 194  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  ||||||||| ||||| |||||||||||||||| ||| | |||||| |||    
T  23660831 cgcaatttttgctaaaacagttacagaatctctatataaatagaggactccactcagttcaaaaaaacacaccaaagagtttc-attgagttgtcgggaa 23660929  T
Q  195 ttctttctctctgctcc 211  Q
     ||||||||||| ||||    
T  23660930 ctctttctctcttctcc 23660946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 23665490 - 23665605
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttc-aaaaatcacaccaaagagtttctattaaattgtcgagaa 194  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  ||||||||| ||||| |||||||||||||||| ||| | |||||| |||    
T  23665490 cgcaatttttgctaaaacagttacagaatctctatataaatagaggactccactcagttcaaaaaaacacaccaaagagtttc-attgagttgtcgggaa 23665588  T
Q  195 ttctttctctctgctcc 211  Q
     ||||||||||| ||||    
T  23665589 ctctttctctcttctcc 23665605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 46964739 - 46964625
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    |||||||||| |||||| ||||||  ||||||||||||||| || ||||  ||||||||||||||||||||||||||||||| ||| | |||||| |||     
T  46964739 cgcaatttttactaaaatagttactgaatctctatataaatagaggactccactcagttcaaaaatcacaccaaagagtttc-attgagttgtcgggaac 46964641  T
Q  196 tctttctctctgctcc 211  Q
    ||||||||||| ||||    
T  46964640 tctttctctcttctcc 46964625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 7570583 - 7570698
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttc-aaaaatcacaccaaagagtttctattaaattgtcgagaa 194  Q
    |||| |||||||||||||||||||| ||||||||||||||| || ||||  ||||||||| ||||| |||||||||||||||| ||| | |||||| |||    
T  7570583 cgcagtttttgctaaaacagttacagaatctctatataaatagaggactccactcagttcaaaaaaacacaccaaagagtttc-attgagttgtcgggaa 7570681  T
Q  195 ttctttctctctgctcc 211  Q
     ||||||||||| ||||    
T  7570682 ctctttctctcttctcc 7570698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 3419716 - 3419602
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||||||||| ||||| | ||||||||||||||| || ||||  |||||||||||||| |||||||||||||||| | | | |||||| |||     
T  3419716 cgcaatttttgctaaaatagttagagaatctctatataaatagaggactccactcagttcaaaaaacacaccaaagagtttc-actgagttgtcgggaac 3419618  T
Q  196 tctttctctctgctcc 211  Q
    ||||||||||| ||||    
T  3419617 tctttctctcttctcc 3419602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 55326504 - 55326391
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  ||| |||||||||| ||||||||||| |||| ||| | |||||| |||     
T  55326504 cgcaatttttgctaaaacagttacagaatctctatataaatagaggactccactaagttcaaaaa-cacaccaaagattttc-attgagttgtcgggaac 55326407  T
Q  196 tctttctctctgctcc 211  Q
    ||||||||||| ||||    
T  55326406 tctttctctcttctcc 55326391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 7570448 - 7570509
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  7570448 tttccttcattcaaatccaat-agtttgtttcctccacttttgtggatttgtttcttttgatc 7570509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 20520684 - 20520603
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttc 177  Q
    |||||||||||||||||| ||||||||||||| |||||||| || ||||  ||||||||| ||||| |||||||||||||||    
T  20520684 cgcaatttttgctaaaacggttacaaaatctcgatataaatagaggactccactcagttccaaaattacaccaaagagtttc 20520603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 27709793 - 27709732
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  27709793 tttccttcattcaaatccaat-agtttgtttcctccacttttgtggatttgtttcttttgatc 27709732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 212
Target Start/End: Complemental strand, 27709658 - 27709544
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||||||||||||||||| ||||||||||||||| | |||||  |||||||| ||| | |||||||||||||||| ||| | ||||||  ||     
T  27709658 cgcaatttttgctaaaacagttacagaatctctatataaatag-agactccactcagtttaaagaacacaccaaagagtttc-attgagttgtcggaaac 27709561  T
Q  196 tctttctctctgctcct 212  Q
    ||||||||||| |||||    
T  27709560 tctttctctcttctcct 27709544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 12111973 - 12112016
Alignment:
Q  95 tgccgcaatttttgctaaaacagttacaaaatctctatataaat 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  12111973 tgccgcaatttttgctaaaacagttacaaaatctctatataaat 12112016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 12971048 - 12971109
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| |||||||||| || |||||||||||||||||||||||||||    
T  12971048 tttccttcattcaaatccaat-agtttgtttcgtccacttttgtggatttgtttcttttgatc 12971109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 14437933 - 14437994
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  14437933 tttccttcattcaaatccaat-agtttgtttcctccgcttttgtggatttgtttcttttgatc 14437994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 32473257 - 32473318
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| ||||||||| |||||||||||||||||    
T  32473257 tttccttcattcaaatccaat-agtttgtttcctccacttttgtgaatttgtttcttttgatc 32473318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 55326639 - 55326578
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    |||| |||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  55326639 tttcattcattcaaatccaat-agtttgtttcctcaacttttgtggatttgtttcttttgatc 55326578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 12111843 - 12111897
Alignment:
Q  15 cttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    |||| |||| ||||||||| ||||||||||| |||||||||||||||||||||||    
T  12111843 cttcgttcaaatccaatgaatttgtttcctccacttttgtggatttgtttctttt 12111897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 18468074 - 18468013
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| | ||||| ||||| ||||||| |||||||||||||||||||||||||||    
T  18468074 tttccttcattcaaacccaat-agtttttttcctccacttttgtggatttgtttcttttgatc 18468013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 20508489 - 20508415
Alignment:
Q  8 atctttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttc-ttttgatctgatccac 81  Q
    |||||| |||| ||||||| |||| ||||||||||||| |||||||||| |||||||| ||||||||| ||||||    
T  20508489 atcttttcttcgttcatattcaattagtttgtttcctccacttttgtgggtttgtttcattttgatcttatccac 20508415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 20520819 - 20520758
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||| ||||| | ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  20520819 tttcctttattcaaacccaat-agtttgtttcctctgcttttgtggatttgtttcttttgatc 20520758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 46964871 - 46964802
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatctgatccac 81  Q
    ||||||||||||| ||||| | ||||||||| ||| ||| |||||||||||||||||||||||| ||||||    
T  46964871 tttccttcattcaaatccagt-agtttgttttctccactcttgtggatttgtttcttttgatcttatccac 46964802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 55431956 - 55431875
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttc 177  Q
    ||||||||||| ||||||||||||| ||||||||||||||| || ||||  ||||| || |||||  |||||||||||||||    
T  55431956 cgcaatttttgttaaaacagttacagaatctctatataaatagaggactccactcaatttaaaaaatacaccaaagagtttc 55431875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 55432091 - 55432030
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| |||||||||||||  ||||||||||||| ||||||||||||    
T  55432091 tttccttcattcaaatccaat-agtttgtttcctccgcttttgtggatttatttcttttgatc 55432030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 14438068 - 14438132
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaa 160  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  ||| ||||||||||    
T  14438068 cgcaatttttgctaaaacagttacagaatctctatataaatagaggacttcacttagttcaaaaa 14438132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 23660727 - 23660783
Alignment:
Q  15 cttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgat 72  Q
    ||||||||| ||||||| |||||| |||||| ||||||||||||||||||||||||||    
T  23660727 cttcattcaaatccaat-agtttggttcctccacttttgtggatttgtttcttttgat 23660783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 23665359 - 23665415
Alignment:
Q  15 cttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgat 72  Q
    ||||||||| ||||||| |||||| |||||| ||||||||||||||||||||||||||    
T  23665359 cttcattcaaatccaat-agtttggttcctccacttttgtggatttgtttcttttgat 23665415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 18467939 - 18467899
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaat 138  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  18467939 cgcaatttttgctaaaacagttacagaatctctatataaat 18467899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 18472847 - 18472807
Alignment:
Q  33 agtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  18472847 agtttgtttcctccacttttgtggatttgtttcttttgatc 18472807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 32473392 - 32473432
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaat 138  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  32473392 cgcaatttttgctaaaacagttacagaatctctatataaat 32473432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 39775080 - 39775120
Alignment:
Q  33 agtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  39775080 agtttgtttcctccacttttgtggatttgtttcttttgatc 39775120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 757600 - 757656
Alignment:
Q  15 cttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgat 72  Q
    ||||||||| ||||||| || ||||| |||| ||||||||||||||||||||||||||    
T  757600 cttcattcaaatccaat-agcttgttacctccacttttgtggatttgtttcttttgat 757656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 11400038 - 11399974
Alignment:
Q  147 actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaattctttctctctgctcc 211  Q
    |||||||| |||||| | ||||||||||||||||  | |||||||||| ||||||||||| ||||    
T  11400038 actcagtttaaaaataagaccaaagagtttctatcgagttgtcgagaactctttctctcttctcc 11399974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 3419851 - 3419790
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| || |||  ||||||||||||| ||||||||| |||| ||||||||||||    
T  3419851 tttccttcattcaaattcaaatagtttgtttcctccacttttgtgaattt-tttcttttgatc 3419790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 18472733 - 18472693
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaat 138  Q
    ||||||||||||||||||||||||  ||||| |||||||||    
T  18472733 cgcaatttttgctaaaacagttaccgaatctatatataaat 18472693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 95 - 211
Target Start/End: Original strand, 40846955 - 40847073
Alignment:
Q  95 tgccgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgag 192  Q
    |||||||||||||||||||| | ||||||||| ||||||||||  || ||||  |||| ||||||||||||||| ||||||||| |||| | ||||||||    
T  40846955 tgccgcaatttttgctaaaataattacaaaatttctatataaacagaggactccactcggttcaaaaatcacacaaaagagtttatattgagttgtcgag 40847054  T
Q  193 aattctttctctctgctcc 211  Q
    |||||||||||||| ||||    
T  40847055 aattctttctctcttctcc 40847073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 30651639 - 30651527
Alignment:
Q  100 caatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaattc 197  Q
    ||||||||||||||||||||||| ||||||||||||||| || ||||  |||||||||||||| ||||||||||||||| |||| | |||||| ||| ||    
T  30651639 caatttttgctaaaacagttacagaatctctatataaatagaggactccactcagttcaaaaaacacaccaaagagttt-tattgagttgtcgggaactc 30651541  T
Q  198 tttctctctgctcc 211  Q
    ||||||||| ||||    
T  30651540 tttctctcttctcc 30651527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 1934360 - 1934475
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttc-aaaaatcacaccaaagagtttctattaaattgtcgagaa 194  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  ||||||||| ||||| |||||||||||||||| ||| | |||||| |||    
T  1934360 cgcaatttttgctaaaacagttacagaatctctatataaatagaggactccactcagttcaaaaaaacacaccaaagagtttc-attgagttgtcgggaa 1934458  T
Q  195 ttctttctctctgctcc 211  Q
     ||||||||||| ||||    
T  1934459 ctctttctctcttctcc 1934475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 9184786 - 9184899
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  ||| |||||||||| |||||||||||||||| ||| | |||||| |||     
T  9184786 cgcaatttttgctaaaacagttacagaatctctatataaatagaggactccactaagttcaaaaa-cacaccaaagagtttc-attgagttgtcgggaac 9184883  T
Q  196 tctttctctctgctcc 211  Q
    ||||||||||| ||||    
T  9184884 tctttctctcttctcc 9184899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 25477656 - 25477743
Alignment:
Q  92 tgctgccgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttc 177  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||| || ||||  ||||| |||||||| ||||||||||||||||    
T  25477656 tgctgtcgcaatttttgctaaaacagttacagaatctctatataaatagaggactccactcaattcaaaaaacacaccaaagagtttc 25477743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 9180095 - 9180208
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  ||| |||||||||| |||||||||||||||| ||| |  ||||| |||     
T  9180095 cgcaatttttgctaaaacagttacagaatctctatataaatagaggactccactaagttcaaaaa-cacaccaaagagtttc-attgagatgtcgggaac 9180192  T
Q  196 tctttctctctgctcc 211  Q
    ||||||||||| ||||    
T  9180193 tctttctctcttctcc 9180208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 12361110 - 12361049
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  12361110 tttccttcattcaaatccaat-agtttgtttcctccacttttgtggatttgtttcttttgatc 12361049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 25477527 - 25477588
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  25477527 tttccttcattcaaatccaat-agtttgtttcctctacttgtgtggatttgtttcttttgatc 25477588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 30651776 - 30651715
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  30651776 tttccttcattcaaatccaat-agtttgtttcctccacttttgtggatttgtttcttttgatc 30651715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 40846817 - 40846878
Alignment:
Q  8 atctttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    |||||||||||||||| ||  ||||||||||||||||| |||||||||||||||||||||||    
T  40846817 atctttccttcattcaaatttaatgagtttgtttcctccacttttgtggatttgtttctttt 40846878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 12797787 - 12797726
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  12797787 tttccttcattcaaatccaat-agtttgtttcctccgcttttgtggatttgtttcttttgatc 12797726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 25496622 - 25496683
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| |||| ||||||||||||||||||||||    
T  25496622 tttccttcattcaaatccaat-agtttgtttcctcgacttgtgtggatttgtttcttttgatc 25496683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 21523496 - 21523549
Alignment:
Q  8 atctttccttcattcatatc-caatgagtttgtttcctctacttttgtggattt 60  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  21523496 atctttccttcattcatatttcaatgagtttgtttcctctacttttgtggattt 21523549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 1934229 - 1934286
Alignment:
Q  15 cttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||| ||||||| |||||| |||||| |||||||||||||||||||||||||||    
T  1934229 cttcattcaaatccaat-agtttggttcctccacttttgtggatttgtttcttttgatc 1934286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 9179961 - 9180021
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| | |||||||||||||||||||||||||    
T  9179961 tttccttcattcaaatccaat-agtttgtttcctcca-ttttgtggatttgtttcttttgatc 9180021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 9184652 - 9184712
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| | |||||||||||||||||||||||||    
T  9184652 tttccttcattcaaatccaat-agtttgtttcctcca-ttttgtggatttgtttcttttgatc 9184712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 17968200 - 17968257
Alignment:
Q  15 cttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||| ||||||| ||||||||||||| ||||||||||||||||| |||||||||    
T  17968200 cttcattcaaatccaat-agtttgtttcctccacttttgtggatttgttccttttgatc 17968257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 17974585 - 17974646
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| | ||||| ||||||||||||| ||||||||| |||||||||||||||||    
T  17974585 tttccttcattcaaaaccaat-agtttgtttcctccacttttgtgaatttgtttcttttgatc 17974646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 190
Target Start/End: Complemental strand, 19896744 - 19896654
Alignment:
Q  94 ctgccgcaatttttgctaaaacagttacaaaatctctatataaattgaagactactcagttcaaaaatcacaccaaagagtttctattaaattgtcg 190  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||| || ||||       |||||||| |||||||| |||||||||| | ||||||    
T  19896744 ctgccgcaatttttgttaaaacaattacaaaatctctatataaatagaggact------ctcaaaaattacaccaaaaagtttctattgagttgtcg 19896654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 12360975 - 12360935
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaat 138  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  12360975 cgcaatttttgctaaaacagttacagaatctctatataaat 12360935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 18345138 - 18345098
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaat 138  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  18345138 cgcaatttttgctaaaacagttacagaatctctatataaat 18345098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 29678485 - 29678437
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact 146  Q
    ||||||||||||||||||||||||| | |||||||||||||||| ||||    
T  29678485 cgcaatttttgctaaaacagttacagactctctatataaattgaggact 29678437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 12797652 - 12797573
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttc 177  Q
    ||||||||| ||||||||||||||||| ||||||||||||| || ||||  ||||| || |||||  |||||||||||||||    
T  12797652 cgcaattttcgctaaaacagttacaaattctctatataaatagaggactgcactcaatttaaaaa--acaccaaagagtttc 12797573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 17968331 - 17968396
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaat 161  Q
    ||||||||||| ||||||||||||| ||||||||||||||| || ||||  ||| |||||||||||    
T  17968331 cgcaatttttggtaaaacagttacagaatctctatataaatagaggactccacttagttcaaaaat 17968396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 19891848 - 19891912
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaa 160  Q
    ||||||||||||||||| ||||||| ||||||||||||||| || ||||  ||| ||||||||||    
T  19891848 cgcaatttttgctaaaatagttacagaatctctatataaatagaggactccacttagttcaaaaa 19891912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 24537390 - 24537427
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatata 135  Q
    |||||||||||||||||||||||||||| |||||||||    
T  24537390 cgcaatttttgctaaaacagttacaaaagctctatata 24537427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 34495337 - 34495398
Alignment:
Q  8 atctttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    ||||||||||||||||||| |||| | ||||||| ||| |||||||| ||||||||| ||||    
T  34495337 atctttccttcattcatattcaataaatttgtttgctccacttttgtagatttgtttatttt 34495398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 19891734 - 19891782
Alignment:
Q  33 agtttgtttcctctacttttgtggatttgtttcttttgatctgatccac 81  Q
    ||||||||||||| |||||||| ||||||||||||||||| | ||||||    
T  19891734 agtttgtttcctccacttttgtagatttgtttcttttgattttatccac 19891782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 31327425 - 31327366
Alignment:
Q  151 agttcaaaaatcacaccaaagagtttctattaaattgtcgagaattctttctctctgctcc 211  Q
    ||||||||||||||||||||||||||| ||| | |||||| ||| ||||||||||| ||||    
T  31327425 agttcaaaaatcacaccaaagagtttc-attgagttgtcgggaactctttctctcttctcc 31327366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 19896880 - 19896822
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    |||| |||||||| || |||||||||||||||||  ||||||||||||| |||| ||||    
T  19896880 tttcattcattcaaattcaatgagtttgtttccttcacttttgtggattcgtttttttt 19896822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 18345269 - 18345212
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| ||||    |||||||||||||||||||    
T  18345269 tttccttcattcaaatccaat-agtttgtttcctccactt----ggatttgtttcttttgatc 18345212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 29892519 - 29892459
Alignment:
Q  8 atctttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    |||||| ||||||||||||| ||| |||| ||||| |||| |||| ||||||||||||||||    
T  29892519 atcttttcttcattcatatcaaattagtt-gtttcttctatttttatggatttgtttctttt 29892459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 39519120 - 39519008
Alignment:
Q  100 caatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaattc 197  Q
    ||||||||||||||||||||||| ||||||||||||||| || ||||  |||||||||||||| ||||||||||||||| |||| | |||||| ||| ||    
T  39519120 caatttttgctaaaacagttacagaatctctatataaatagaggactccactcagttcaaaaaacacaccaaagagttt-tattgagttgtcgggaactc 39519022  T
Q  198 tttctctctgctcc 211  Q
    ||||||||| ||||    
T  39519021 tttctctcttctcc 39519008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 20180529 - 20180604
Alignment:
Q  104 ttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttc 177  Q
    ||||||||||||||||||| ||||||||||||||| || ||||  |||||||||||||||||||||||||||||||    
T  20180529 ttttgctaaaacagttacagaatctctatataaatagaggactccactcagttcaaaaatcacaccaaagagtttc 20180604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 98 - 206
Target Start/End: Original strand, 37248170 - 37248277
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  ||||||||||||||  ||||||||||||||| ||| | |||||| |||     
T  37248170 cgcaatttttgctaaaacagttacagaatctctatataaatagaggactccactcagttcaaaaa--acaccaaagagtttc-attgagttgtcgggaac 37248266  T
Q  196 tctttctctct 206  Q
    |||||||||||    
T  37248267 tctttctctct 37248277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 39523761 - 39523647
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  |||||||||||||| ||||||||||| ||| |||  | |||||| |||     
T  39523761 cgcaatttttgctaaaacagttacagaatctctatataaatagaggactccactcagttcaaaaaacacaccaaagaattt-tatcgagttgtcgggaac 39523663  T
Q  196 tctttctctctgctcc 211  Q
    ||||||||||| ||||    
T  39523662 tctttctctcttctcc 39523647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 16115593 - 16115680
Alignment:
Q  90 catgctgccgcaatttttgctaaaacagttacaaaatctctatataaattgaaga--ctactcagttcaaaaatcacaccaaagagtt 175  Q
    |||| |||||||||||| ||||||||| ||||||||||||||||||||  || ||  | |||||||||||||||||||||||||||||    
T  16115593 catgttgccgcaattttagctaaaacatttacaaaatctctatataaacagaggattccactcagttcaaaaatcacaccaaagagtt 16115680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 6154667 - 6154728
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  6154667 tttccttcattcaaatccaat-agtttgtttcctccacttttgtggatttgtttcttttgatc 6154728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 12103753 - 12103672
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttc 177  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||  |||||||| ||||  ||||||||| ||||||    
T  12103753 cgcaatttttgctaaaacagttacaaaatctctatataaatagaggactccactcagtttaaaacacacaccaaatagtttc 12103672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 26668140 - 26668079
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  26668140 tttccttcattcaaatccaat-agtttgtttcctccacttttgtggatttgtttcttttgatc 26668079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 26939737 - 26939676
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  26939737 tttccttcattcaaatccaat-agtttgtttcctccacttttgtggatttgtttcttttgatc 26939676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 16115462 - 16115522
Alignment:
Q  9 tctttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    |||||||||||||||||||||||||||| |||| ||| |||||||||||||| ||||||||    
T  16115462 tctttccttcattcatatccaatgagttcgttttctccacttttgtggatttctttctttt 16115522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 6512005 - 6512086
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttc 177  Q
    |||| ||||||||||||||||| || ||||||||||||||| || ||||  |||||||||||||| |||| |||||||||||    
T  6512005 cgcattttttgctaaaacagttgcagaatctctatataaatagaggactccactcagttcaaaaaacacatcaaagagtttc 6512086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 36424500 - 36424443
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||    
T  36424500 tttccttcattcaaatccaat-agtttgtttcctccacttttgtggatttgtttctttt 36424443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 37537172 - 37537233
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||| ||||||| |||||||||||||||||||||||||||    
T  37537172 tttccttcattcaaatccaat-agtttttttcctccacttttgtggatttgtttcttttgatc 37537233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 37646291 - 37646352
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| ||||| ||||||| |||||||||||||||||||||||||||    
T  37646291 tttccttcattcaaatccaat-agtttttttcctccacttttgtggatttgtttcttttgatc 37646352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 29167339 - 29167382
Alignment:
Q  95 tgccgcaatttttgctaaaacagttacaaaatctctatataaat 138  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  29167339 tgccgcaatttttgctaaaacagttacagaatctctatataaat 29167382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 37248034 - 37248095
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    |||| |||||||| ||||||| |||||||| |||| |||||||||||||||||||||||||||    
T  37248034 tttcattcattcaaatccaat-agtttgttacctccacttttgtggatttgtttcttttgatc 37248095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 39519257 - 39519196
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| |||||| |||||| |||||||||||||||||| ||||||||    
T  39519257 tttccttcattcaaatccaat-agtttggttcctccacttttgtggatttgtttattttgatc 39519196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 39523896 - 39523835
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    ||||||||||||| ||||||| |||||| |||||| |||||||||||||||||| ||||||||    
T  39523896 tttccttcattcaaatccaat-agtttggttcctccacttttgtggatttgtttattttgatc 39523835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 6154802 - 6154866
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaa 160  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  ||| ||||||||||    
T  6154802 cgcaatttttgctaaaacagttacagaatctctatataaatagaggactcaacttagttcaaaaa 6154866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 26668005 - 26667941
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaa 160  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  ||| ||||||||||    
T  26668005 cgcaatttttgctaaaacagttacagaatctctatataaatagaggactccacttagttcaaaaa 26667941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 26939602 - 26939538
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaa 160  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  ||| ||||||||||    
T  26939602 cgcaatttttgctaaaacagttacagaatctctatataaatagaggactccacttagttcaaaaa 26939538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 29167207 - 29167267
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgat 72  Q
    |||| |||||||| ||||||| | ||||||||||| ||||||||||||||||||||||||||    
T  29167207 tttcattcattcaaatccaat-attttgtttcctccacttttgtggatttgtttcttttgat 29167267  T

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Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 36424365 - 36424301
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaa 160  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  ||| ||||||||||    
T  36424365 cgcaatttttgctaaaacagttacagaatctctatataaatagaggactccacttagttcaaaaa 36424301  T

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Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 37537307 - 37537347
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaat 138  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  37537307 cgcaatttttgctaaaacagttacagaatctctatataaat 37537347  T

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Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 7452616 - 7452554
Alignment:
Q  11 tttccttcattcatatccaatgagttt-gtttcctctacttttgtggatttgtttcttttgatc 73  Q
    |||| |||||||| ||||||| ||||| |||||||| |||||||||||||||||||||||||||    
T  7452616 tttcattcattcaaatccaat-agtttagtttcctccacttttgtggatttgtttcttttgatc 7452554  T

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Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 6511870 - 6511931
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    |||| |||||||| ||||||| |||||||||| ||  ||||||||||||||||||||||||||    
T  6511870 tttcattcattcaaatccaat-agtttgtttcttccgcttttgtggatttgtttcttttgatc 6511931  T

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Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 17159236 - 17159174
Alignment:
Q  8 atctttccttcattcatatccaatgagtttgtttcctctacttttgtgga-tttgtttctttt 69  Q
    |||||| |||||||||||| ||||  ||||||||||||||||||| |||| ||||||||||||    
T  17159236 atcttttcttcattcatattcaattcgtttgtttcctctacttttttggattttgtttctttt 17159174  T

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Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 20180388 - 20180449
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    |||||||| |||| || |||| ||||||||||||| |||| ||||||||||||||||||||||    
T  20180388 tttccttcgttcaaattcaat-agtttgtttcctccacttatgtggatttgtttcttttgatc 20180449  T

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Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 37646428 - 37646466
Alignment:
Q  100 caatttttgctaaaacagttacaaaatctctatataaat 138  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  37646428 caatttttgctaaaacagttacagaatctctatataaat 37646466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 40148623 - 40148542
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttc 177  Q
    ||||||||||||||||||| ||| | |||||||||||||||  | ||||  ||| |||||||||| ||||| ||||||||||    
T  40148623 cgcaatttttgctaaaacaattatagaatctctatataaataaaggacttcacttagttcaaaaaacacacgaaagagtttc 40148542  T

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Target: chr5; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 40148754 - 40148698
Alignment:
Q  15 cttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgat 72  Q
    ||||||||| ||||||| ||||||||||||| |||| |||| ||||||||||||||||    
T  40148754 cttcattcaaatccaat-agtttgtttcctccacttgtgtgaatttgtttcttttgat 40148698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 7452480 - 7452440
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaat 138  Q
    |||||||||||||||||||| |||| |||||||||||||||    
T  7452480 cgcaatttttgctaaaacagatacagaatctctatataaat 7452440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 9726176 - 9726235
Alignment:
Q  151 agttcaaaaatcacaccaaagagtttctattaaattgtcgagaattctttctctctgctcc 211  Q
    ||||||||||||||||||||||||||| ||| ||||||||  || ||||||||||| ||||    
T  9726176 agttcaaaaatcacaccaaagagtttc-attgaattgtcggaaactctttctctcttctcc 9726235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 15414160 - 15414198
Alignment:
Q  31 tgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    |||||||||||| ||||||||||||| ||||||||||||    
T  15414160 tgagtttgtttcatctacttttgtgggtttgtttctttt 15414198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 36430380 - 36430325
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttt 68  Q
    |||| |||||||| ||||||| |||| |||||||| ||||||||||||||||||||||    
T  36430380 tttcattcattcaaatccaat-agtt-gtttcctccacttttgtggatttgtttcttt 36430325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 4872573 - 4872514
Alignment:
Q  151 agttcaaaaatcacaccaaagagtttctattaaattgtcgagaattctttctctctgctcc 211  Q
    ||||||||||||| ||||||||||||| ||| | |||||| ||| ||||||||||| ||||    
T  4872573 agttcaaaaatcataccaaagagtttc-attgagttgtcgggaactctttctctcttctcc 4872514  T

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Target: scaffold0690 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 5956 - 5841
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaat 195  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||  ||| ||||| |||   |||||||||||||| |||| | ||||||| ||     
T  5956 cgcaatttttgctaaaacagttacaaaatctctatataaatagaggactccacttagttcgaaagagacaccaaagagtttttattgagttgtcgataac 5857  T
Q  196 tctttctctctgctcc 211  Q
    ||||||||||| ||||    
T  5856 tctttctctcttctcc 5841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 6093 - 6032
Alignment:
Q  8 atctttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttctttt 69  Q
    |||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  6093 atctttccttcattcaaatcaaatgagtttgtttcctccacttttgtggatttgtttctttt 6032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 98 - 204
Target Start/End: Complemental strand, 7835 - 7727
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttc-aaaaatcacaccaaagagtttctattaaattgtcgagaa 194  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||  |||| |||| ||||| |||||||||||||||| ||| | |||||| |||    
T  7835 cgcaatttttgctaaaacagttacagaatctctatataaatagaggactccactcggttcaaaaaaacacaccaaagagtttc-attgagttgtcgggaa 7737  T
Q  195 ttctttctct 204  Q
     |||||||||    
T  7736 ctctttctct 7727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 7970 - 7909
Alignment:
Q  11 tttccttcattcatatccaatgagtttgtttcctctacttttgtggatttgtttcttttgatc 73  Q
    |||| |||||||| ||||||| ||||||||||||| ||| |||||||||||||||||||||||    
T  7970 tttcattcattcaaatccaat-agtttgtttcctccactattgtggatttgtttcttttgatc 7909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 147814 - 147869
Alignment:
Q  151 agttcaaaaatcacaccaaagagtttctattaaattgtcgagaattctttctctct 206  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||    
T  147814 agttcaaaaatcacaccaaagagtttctattgaattgtcgagaactctttatctct 147869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 214
Target Start/End: Complemental strand, 4696 - 4581
Alignment:
Q  101 aatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttctattaaattgtcgagaattct 198  Q
    |||||||||||||||| |||||||||||||||||| |  || ||||  ||||||||||||||| |||||    ||||| |||| | || ||||||| |||    
T  4696 aatttttgctaaaacaattacaaaatctctatatatacagaggactccactcagttcaaaaattacaccgtgcagtttatattgagttttcgagaactct 4597  T
Q  199 ttctctctgctcctcc 214  Q
    |||||||| |||||||    
T  4596 ttctctcttctcctcc 4581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 29902 - 29822
Alignment:
Q  98 cgcaatttttgctaaaacagttacaaaatctctatataaattgaagact--actcagttcaaaaatcacaccaaagagtttc 177  Q
    |||||||||| |||||||||||| | ||||||||||||||| || ||||  | |||||||||||| ||||||||||||||||    
T  29902 cgcaattttttctaaaacagttatagaatctctatataaatagaggactccaatcagttcaaaaa-cacaccaaagagtttc 29822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 26128 - 26069
Alignment:
Q  151 agttcaaaaatcacaccaaagagtttctattaaattgtcgagaattctttctctctgctcc 211  Q
    ||||||||||||||||||||||||||| ||| | ||| || ||| ||||||||||| ||||    
T  26128 agttcaaaaatcacaccaaagagtttc-attgagttgccgggaactctttctctcttctcc 26069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 35857 - 35812
Alignment:
Q  92 tgctgccgcaatttttgctaaaacagttacaaaatctctatataaa 137  Q
    ||||| |||||| |||||||||||||||||||||| ||||||||||    
T  35857 tgctgtcgcaatgtttgctaaaacagttacaaaatttctatataaa 35812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 145845 - 145904
Alignment:
Q  151 agttcaaaaatcacaccaaagagtttctattaaattgtcgagaattctttctctctgctcc 211  Q
    ||||||||||||||||||||||| ||||||| | ||||||| || ||||||||||| ||||    
T  145845 agttcaaaaatcacaccaaagag-ttctattgagttgtcgataactctttctctcttctcc 145904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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