View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2581_low_2 (Length: 550)

Name: NF2581_low_2
Description: NF2581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2581_low_2
NF2581_low_2
[»] chr4 (10 HSPs)
chr4 (20-537)||(53472522-53473038)
chr4 (348-518)||(53469652-53469823)
chr4 (390-521)||(27272572-27272705)
chr4 (348-487)||(32015122-32015262)
chr4 (379-532)||(10395953-10396107)
chr4 (376-527)||(50887389-50887540)
chr4 (348-434)||(29235206-29235291)
chr4 (348-433)||(9010892-9010977)
chr4 (395-527)||(21206356-21206491)
chr4 (350-518)||(13816904-13817073)
[»] chr2 (7 HSPs)
chr2 (348-518)||(8761171-8761343)
chr2 (348-479)||(37965518-37965651)
chr2 (348-469)||(10128460-10128582)
chr2 (401-531)||(25550091-25550221)
chr2 (473-537)||(37965259-37965323)
chr2 (348-390)||(15140727-15140769)
chr2 (360-437)||(15140779-15140856)
[»] chr3 (5 HSPs)
chr3 (348-537)||(30046377-30046568)
chr3 (376-527)||(25889611-25889763)
chr3 (348-464)||(31141363-31141480)
chr3 (378-415)||(25578999-25579036)
chr3 (393-504)||(37133784-37133896)
[»] chr7 (10 HSPs)
chr7 (379-522)||(7961767-7961911)
chr7 (376-527)||(11269944-11270096)
chr7 (360-436)||(1103129-1103205)
chr7 (360-532)||(1716614-1716787)
chr7 (440-522)||(36207996-36208078)
chr7 (348-410)||(1345068-1345129)
chr7 (349-398)||(1103078-1103127)
chr7 (474-518)||(11269802-11269846)
chr7 (458-512)||(11280342-11280396)
chr7 (492-532)||(1345214-1345254)
[»] chr1 (6 HSPs)
chr1 (379-507)||(22827037-22827166)
chr1 (379-507)||(22840959-22841088)
chr1 (348-519)||(24284782-24284954)
chr1 (438-518)||(20260944-20261024)
chr1 (348-487)||(24272707-24272846)
chr1 (423-507)||(22826642-22826727)
[»] chr6 (12 HSPs)
chr6 (348-518)||(14721668-14721838)
chr6 (379-507)||(13557985-13558114)
chr6 (389-537)||(16910077-16910225)
chr6 (379-520)||(2921839-2921981)
chr6 (378-522)||(27340600-27340743)
chr6 (378-522)||(27401340-27401483)
chr6 (403-527)||(13555994-13556119)
chr6 (376-518)||(11678827-11678966)
chr6 (382-507)||(2923168-2923295)
chr6 (400-506)||(11677133-11677240)
chr6 (359-484)||(22880002-22880128)
chr6 (359-484)||(22898117-22898243)
[»] chr5 (4 HSPs)
chr5 (376-511)||(19670657-19670793)
chr5 (376-504)||(32795543-32795672)
chr5 (395-489)||(26896586-26896681)
chr5 (376-452)||(32796359-32796436)
[»] chr8 (2 HSPs)
chr8 (361-485)||(33897182-33897307)
chr8 (426-507)||(42001905-42001987)
[»] scaffold0007 (1 HSPs)
scaffold0007 (348-405)||(260473-260530)


Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 20 - 537
Target Start/End: Complemental strand, 53473038 - 53472522
Alignment:
Q  20 ttatggaccacaaaatagattaccagatagtgatgatggattactatgtgctacttaggggcatgaactgatggattacaaccttaaagaggaacctaac 119  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53473038 ttatggaccacaaaatagattaccagatagtaatgatggattactatgtgctacttaggggcatgaactgatggattacaaccttaaagaggaacctaac 53472939  T
Q  120 ataccacccttgttgaactctataaactcttgaaattatggccgaccatatcaacccacattcacgtttttaaagtacatgacaacagtcactgtccgtg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53472938 ataccacccttgttgaactctataaactcttgaaattatggccgaccatatcaacccacattcacgtttttaaagtacatgacaacagtcactgtccgtg 53472839  T
Q  220 tacactattgttcagttcaaaactcactttataaaaatttaatcggttcaaaacttaactcaagttcgtcacaattttttctacttaaattcgaatggtt 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  53472838 tacactattgttcagttcaaaactcactttataaaaatttaatcggttcaaaacttaattcaagttcgtcacaattttttctacttaaattcgaatggtt 53472739  T
Q  320 tcttccaagtctaatacactcccaagtattgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattt 419  Q
    |||||||||| | ||||||||| ||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||  |    
T  53472738 tcttccaagttttatacactccaaagtattgaaatatgccttgaattagtgttgggaaaatgttccacatcggataatacgaagaaatatgcaaaga-ct 53472640  T
Q  420 tgccatataaataaaagtttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaatt 519  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  53472639 tgccatataaataaaagtttgtgtgttagtatttcatgcaccaatggttagtgggttttgctatagctagcgttacctctactattcagtatctgtaatt 53472540  T
Q  520 atcgattatagtgaattc 537  Q
    ||||||||||||||||||    
T  53472539 atcgattatagtgaattc 53472522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 348 - 518
Target Start/End: Complemental strand, 53469823 - 53469652
Alignment:
Q  348 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtatt 446  Q
    |||||||||| ||| ||||| |||||| ||||||| | ||||| ||||||| ||||||||||||||||| || | ||||||||||||||| |||||| ||    
T  53469823 ttgaaatatgcctttaattaatgttgggaaaatgttctacatcagataatatgaagaaatatgcaaagacttggtcatataaataaaagtcttgtgtgtt 53469724  T
Q  447 agtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaat 518  Q
    |||||||| || | |||| |||| ||| ||||  |||||| |  ||||||| || |||||||||||||||||    
T  53469723 agtatttcttgaatcaatagttagtggattttactatagccaatgttacctatattattcagtatctgtaat 53469652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 390 - 521
Target Start/End: Original strand, 27272572 - 27272705
Alignment:
Q  390 cggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg-ttttgttatagct 487  Q
    ||||||||| |||||||||||||||| ||| | ||||||||||||||| |||||| |||||||||| ||||||||| |||| |||| ||||| |||||||    
T  27272572 cggataatatgaagaaatatgcaaaggtttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaatagttagtgggtttttgctatagct 27272671  T
Q  488 agcgttacctctactattcagtatctgtaattat 521  Q
    ||| |||| |||||||||||  || |||||||||    
T  27272672 agcattacttctactattcaaaatttgtaattat 27272705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 348 - 487
Target Start/End: Original strand, 32015122 - 32015262
Alignment:
Q  348 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtatt 446  Q
    |||||||||||||||||||||||||| ||||| ||| |||||   |||||| ||||| ||||||||||| || || | ||||||||| | ||||||| ||    
T  32015122 ttgaaatatgtcttgaattagtgttgtaaaaaagtctcacataaaataataggaagatatatgcaaagacttggcaacataaataaaggttttgtgtgtt 32015221  T
Q  447 agtatttcatgcaccaatggttaatgggttttgttatagct 487  Q
    |||||||| ||||||||| |||| ||||||||| |||||||    
T  32015222 agtatttcttgcaccaatagttagtgggttttgctatagct 32015262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 379 - 532
Target Start/End: Original strand, 10395953 - 10396107
Alignment:
Q  379 atgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttt 477  Q
    ||||| |||||| || || | ||||||||||||||||| |  ||||||||||||||||  |||||| |||||||||| |||| |||| |||| ||||||     
T  10395953 atgtctcacatcagagaagatgaagaaatatgcaaagactcggccatataaataaaagccttgtgtgttagtatttcttgcatcaatagttagtgggtta 10396052  T
Q  478 tgttatagctagcgttacctctactattcagtatctgtaattatcgattatagtg 532  Q
    || ||||| | | ||| | ||||||||||||||||||| ||||||||||||||||    
T  10396053 tgctatagatggtgttccttctactattcagtatctgtgattatcgattatagtg 10396107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 376 - 527
Target Start/End: Complemental strand, 50887540 - 50887389
Alignment:
Q  376 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg 474  Q
    |||||||||| ||||| |||||| ||| ||||||||||||  || |||||||||||||| || |||||  || || || | | ||| ||| |||| ||||    
T  50887540 aaaatgtcccgcatcgaataatatgaa-aaatatgcaaaggcttggccatataaataaatgtcttgtgcgttggttttgcttacactaatagttagtggg 50887442  T
Q  475 ttttgttatagctagcgttacctctactattcagtatctgtaattatcgatta 527  Q
    ||||| |||||||||  |||||||||||||| ||||| |||||||||| ||||    
T  50887441 ttttgctatagctagtattacctctactatttagtatatgtaattatcaatta 50887389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 434
Target Start/End: Complemental strand, 29235291 - 29235206
Alignment:
Q  348 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaa 434  Q
    |||||||||  ||||||||| |||||| ||||| ||||||||||||| ||| ||| ||||||||||||| || ||||||||||||||    
T  29235291 ttgaaatattccttgaatta-tgttgggaaaatatcccacatcggattatatgaaaaaatatgcaaagacttggccatataaataaa 29235206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 433
Target Start/End: Complemental strand, 9010977 - 9010892
Alignment:
Q  348 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataa 433  Q
    |||||||||| || ||||||||||| | || |||||||||||||||| ||| |||||||||||| | || || |||||||||||||    
T  9010977 ttgaaatatgcctggaattagtgttaggaatatgtcccacatcggatgatatgaagaaatatgctatgacttggccatataaataa 9010892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 395 - 527
Target Start/End: Original strand, 21206356 - 21206491
Alignment:
Q  395 aatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtattagtatttca-tgcaccaatggttaatggg-ttttgttatagctagcg 491  Q
    ||||||||||||||| |||||  || | ||||||||||||||   ||||||||||||||| | | ||||||| |||| |||| ||||||||||| ||||     
T  21206356 aatacgaagaaatatacaaaggcttggtcatataaataaaagccatgtgtattagtattttattacaccaatagttagtgggtttttgttatagttagca 21206455  T
Q  492 ttacctctactattcagtatctgtaattatcgatta 527  Q
    |||| |||| ||||||  || |||||||||| ||||    
T  21206456 ttacttctattattcaaaatttgtaattatcaatta 21206491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 350 - 518
Target Start/End: Original strand, 13816904 - 13817073
Alignment:
Q  350 gaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaa-agtttgtgtattag 448  Q
    ||||||||  |||||||| |||||| |||| ||| ||||||| | |||| |||||||||||| |||| || | |||||||||||| |  || ||| |||     
T  13816904 gaaatatgcattgaattaatgttgggaaaaagtctcacatcgaagaatatgaagaaatatgcgaagacttggtcatataaataaagaccttatgtgttat 13817003  T
Q  449 tatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaat 518  Q
    |||||| || || ||| |||| || ||||||  ||||||||  || || || ||||||||||| ||||||    
T  13817004 tatttcttgtacaaatagttagtgagttttgcgatagctagtattgccactgctattcagtatttgtaat 13817073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 8e-50; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 348 - 518
Target Start/End: Complemental strand, 8761343 - 8761171
Alignment:
Q  348 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgc-catataaataaaagt-ttgtgtat 445  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| ||||||| ||||||||||||||| | ||||  ||||||||||||||| |||||| |    
T  8761343 ttgaaatatgtcttgaatttgtgttgggaaaatgtcccacatcagataatatgaagaaatatgcaaatactttggtcatataaataaaagtcttgtgtgt 8761244  T
Q  446 tagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaat 518  Q
    ||||||||| ||||||||| |||| ||| |||||||||||||||| ||| |||||||||||||||||||||||    
T  8761243 tagtatttcttgcaccaattgttagtggattttgttatagctagcattatctctactattcagtatctgtaat 8761171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 348 - 479
Target Start/End: Complemental strand, 37965651 - 37965518
Alignment:
Q  348 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag--tttgtgtat 445  Q
    |||||||||| |||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| || |  |||||||||||||  ||||||| |    
T  37965651 ttgaaatatgccttgaattagtgttgggaaaatgtctcacatcggataatatgaagaaatatgcaaagacttggatatataaataaaagtctttgtgtgt 37965552  T
Q  446 tagtatttcatgcaccaatggttaatgggttttg 479  Q
    ||||||||| ||||||||| ||||||||||||||    
T  37965551 tagtatttcttgcaccaatagttaatgggttttg 37965518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 348 - 469
Target Start/End: Original strand, 10128460 - 10128582
Alignment:
Q  348 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtatt 446  Q
    |||||||||||| |||||||||||||||||||| | |||||||||| |||| ||||||||||| ||||| || | ||||||||||||||| |||||| ||    
T  10128460 ttgaaatatgtcctgaattagtgttggaaaaatattccacatcggagaatatgaagaaatatggaaagacttggtcatataaataaaagtcttgtgtgtt 10128559  T
Q  447 agtatttcatgcaccaatggtta 469  Q
    |||||||| ||||||||| ||||    
T  10128560 agtatttcttgcaccaatagtta 10128582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 401 - 531
Target Start/End: Original strand, 25550091 - 25550221
Alignment:
Q  401 aagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctct 499  Q
    |||||||||| |||||||| ||||||||||||||||| |||||| | |||||||| || || ||| |||| ||| ||||  ||||||| | ||||||| |    
T  25550091 aagaaatatgtaaagatttggccatataaataaaagtcttgtgtgt-agtatttcttggactaatagttagtggattttcctatagctggagttaccttt 25550189  T
Q  500 actattcagtatctgtaattatcgattatagt 531  Q
    ||||||||||||||||||||||||||||||||    
T  25550190 actattcagtatctgtaattatcgattatagt 25550221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 473 - 537
Target Start/End: Complemental strand, 37965323 - 37965259
Alignment:
Q  473 ggttttgttatagctagcgttacctctactattcagtatctgtaattatcgattatagtgaattc 537  Q
    ||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37965323 ggttttgctataggtaacgttacctctactattcagtatctgtaattatcgattatagtgaattc 37965259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 390
Target Start/End: Original strand, 15140727 - 15140769
Alignment:
Q  348 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatc 390  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15140727 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatc 15140769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 360 - 437
Target Start/End: Original strand, 15140779 - 15140856
Alignment:
Q  360 ttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt 437  Q
    ||||||||||||||| |  |||||||||||||| ||| | ||||||||||| |||||||| | |||||||||||||||    
T  15140779 ttgaattagtgttgggattatgtcccacatcggttaaaatgaagaaatatgtaaagatttggtcatataaataaaagt 15140856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 348 - 537
Target Start/End: Original strand, 30046377 - 30046568
Alignment:
Q  348 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaa--tatgcaaagattttgccatataaataaaag-tttgtgta 444  Q
    |||||||||| ||||||||| |||||| |||||||| || ||||||||||| ||| |||  |||||||||| ||  ||||||||||||||| |||||||     
T  30046377 ttgaaatatgccttgaattaatgttgggaaaatgtctcatatcggataatatgaaaaaaaatatgcaaagacttgaccatataaataaaagctttgtgtg 30046476  T
Q  445 ttagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaattatcgattatagtgaattc 537  Q
    |||||||||| || || ||| |||| | ||||||| ||||||||||||||||||||||||||| ||| || |||||||||||| | |||||||    
T  30046477 ttagtatttcttgtac-aatagttagtcggttttgctatagctagcgttacctctactattcaatatatgcaattatcgattacattgaattc 30046568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 376 - 527
Target Start/End: Original strand, 25889611 - 25889763
Alignment:
Q  376 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg 474  Q
    ||||||||||||||||||||| | |||||  ||||||||| ||| | ||||||||||||||| |||| | |||||||||| ||||||||| |||| ||||    
T  25889611 aaaatgtcccacatcggataacatgaagagttatgcaaaggtttggtcatataaataaaagtcttgtatgttagtatttcttgcaccaatagttagtggg 25889710  T
Q  475 ttttgttatagctagcgttacctctactattcagtatctgtaattatcgatta 527  Q
    ||||| ||||||||||  |||||||| |||| ||| | |||||||||| ||||    
T  25889711 ttttgctatagctagcagtacctctattatttagtctttgtaattatcaatta 25889763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 348 - 464
Target Start/End: Original strand, 31141363 - 31141480
Alignment:
Q  348 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtatt 446  Q
    |||||||||  ||| || || |||| |||||| ||| |||||| || |||| |||||||||||||||||||| ||||||||||||||||| ||| || ||    
T  31141363 ttgaaatataacttaaaatattgttagaaaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgtt 31141462  T
Q  447 agtatttcatgcaccaat 464  Q
    |||||||| | |||||||    
T  31141463 agtatttcttacaccaat 31141480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 415
Target Start/End: Complemental strand, 25579036 - 25578999
Alignment:
Q  378 aatgtcccacatcggataatacgaagaaatatgcaaag 415  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  25579036 aatgtctcacatcggataatatgaagaaatatgcaaag 25578999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 504
Target Start/End: Complemental strand, 37133896 - 37133784
Alignment:
Q  393 ataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcg 491  Q
    |||||| ||| |||||| | ||||||| ||| ||| ||||||||| ||||||||||||||||| | || |||| |||| ||  ||||| |||| |||  |    
T  37133896 ataatatgaaaaaatatacgaagatttagccgtatgaataaaagtcttgtgtattagtatttcttacatcaatagttagtgaattttgctataactaatg 37133797  T
Q  492 ttacctctactat 504  Q
    ||| |||||||||    
T  37133796 ttaactctactat 37133784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 379 - 522
Target Start/End: Original strand, 7961767 - 7961911
Alignment:
Q  379 atgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttt 477  Q
    ||||||||||||| |||||| |||||||||||||||| ||| | ||||||||||||||  |||||| |||||||||| ||||||||| |||| |||||||    
T  7961767 atgtcccacatcgcataatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaatagttagtgggttt 7961866  T
Q  478 tgttatagctagcgttacctctactattcagtatctgtaattatc 522  Q
    || |||||||||| |||| |||||||||||  || ||||||||||    
T  7961867 tgctatagctagcattacttctactattcaaaatttgtaattatc 7961911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 376 - 527
Target Start/End: Original strand, 11269944 - 11270096
Alignment:
Q  376 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg 474  Q
    ||||||||||||||||||||||| ||||||||||  |||  ||| | ||||||||||||||  |||||| ||||||||   ||||||||| |||| ||||    
T  11269944 aaaatgtcccacatcggataatatgaagaaatataaaaaagtttggtcatataaataaaagccttgtgtgttagtattagttgcaccaatagttagtggg 11270043  T
Q  475 ttttgttatagctagcgttacctctactattcagtatctgtaattatcgatta 527  Q
    ||||| |||| |||| ||||||||||||||||||||| |||||||||| ||||    
T  11270044 ttttgctataactagtgttacctctactattcagtatttgtaattatcaatta 11270096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 360 - 436
Target Start/End: Original strand, 1103129 - 1103205
Alignment:
Q  360 ttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag 436  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||    
T  1103129 ttgaattagtgttggaaaaacgtcccacatcggataatatgaagaaatatgtaaagacttggccatataaataaaag 1103205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 360 - 532
Target Start/End: Complemental strand, 1716787 - 1716614
Alignment:
Q  360 ttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgc 458  Q
    ||||| ||||||||||||||  || ||||||| | |||| ||| ||||||| ||||| ||  ||||||||||||| || |||||| ||| |||||| |||    
T  1716787 ttgaaatagtgttggaaaaaattctcacatcgaagaatatgaaaaaatatgtaaagacttgaccatataaataaaggtcttgtgtgttaatatttcttgc 1716688  T
Q  459 accaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaattatcgattatagtg 532  Q
    | |||| |||| || ||||| |||||||| |  |||||||||||||||||||| | | || |||||||||||||    
T  1716687 atcaatagttagtgagtttttttatagctggtattacctctactattcagtatatatgataatcgattatagtg 1716614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 440 - 522
Target Start/End: Original strand, 36207996 - 36208078
Alignment:
Q  440 gtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaattatc 522  Q
    |||| |||||||||| ||||||||| |||| ||||||||| |||||||||||||| |||||||||| ||||||| ||||||||    
T  36207996 gtgtgttagtatttcttgcaccaatagttagtgggttttgctatagctagcgttagctctactatttagtatctctaattatc 36208078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 410
Target Start/End: Original strand, 1345068 - 1345129
Alignment:
Q  348 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatg 410  Q
    ||||||||||||||||||||||||| |||||| ||| ||||||| | |||| |||||||||||    
T  1345068 ttgaaatatgtcttgaattagtgttagaaaaa-gtctcacatcgaagaataagaagaaatatg 1345129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 1103078 - 1103127
Alignment:
Q  349 tgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataata 398  Q
    ||||||||| |||||||||||||||| |||||||| |||||| |||||||    
T  1103078 tgaaatatgccttgaattagtgttgggaaaatgtctcacatctgataata 1103127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 474 - 518
Target Start/End: Complemental strand, 11269846 - 11269802
Alignment:
Q  474 gttttgttatagctagcgttacctctactattcagtatctgtaat 518  Q
    |||||| ||||||||||||||||||||||| | ||||||||||||    
T  11269846 gttttgctatagctagcgttacctctactagttagtatctgtaat 11269802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 512
Target Start/End: Original strand, 11280342 - 11280396
Alignment:
Q  458 caccaatggttaatgggttttgttatagctagcgttacctctactattcagtatc 512  Q
    ||||||| |||| | ||||||| |||||||||||||||||||||||  |||||||    
T  11280342 caccaatagttagtaggttttgctatagctagcgttacctctactagacagtatc 11280396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 492 - 532
Target Start/End: Original strand, 1345214 - 1345254
Alignment:
Q  492 ttacctctactattcagtatctgtaattatcgattatagtg 532  Q
    |||| ||||||||||||||| |||||| |||||||||||||    
T  1345214 ttacttctactattcagtatatgtaatcatcgattatagtg 1345254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 379 - 507
Target Start/End: Complemental strand, 22827166 - 22827037
Alignment:
Q  379 atgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtattagtatttcatgcaccaatggttaatgggttt 477  Q
    |||||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||  |||||| ||  |||||| ||||||||| |||| |||||||    
T  22827166 atgtcccacatcggataatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttcatatttcttgcaccaatagttagtgggttt 22827067  T
Q  478 tgttatagctagcgttacctctactattca 507  Q
    ||||||||||||| |||| |||||||||||    
T  22827066 tgttatagctagcattacttctactattca 22827037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 379 - 507
Target Start/End: Original strand, 22840959 - 22841088
Alignment:
Q  379 atgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttt 477  Q
    |||||||||||||||||||| ||||||||||||||||  || | |||| |||||||||  |||||| |||||||||| ||||||||| |||| |||||||    
T  22840959 atgtcccacatcggataatatgaagaaatatgcaaaggcttggtcataaaaataaaagccttgtgtgttagtatttcttgcaccaatagttagtgggttt 22841058  T
Q  478 tgttatagctagcgttacctctactattca 507  Q
    |  |||||||||| |||| |||||||||||    
T  22841059 tactatagctagcattacttctactattca 22841088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 348 - 519
Target Start/End: Original strand, 24284782 - 24284954
Alignment:
Q  348 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtatt 446  Q
    |||||||||| ||||||||| | |||| |||| |||||||||| || |||| ||| ||||||||||| |||| || ||||||||||| |  |||||| ||    
T  24284782 ttgaaatatgccttgaattaatattgggaaaaagtcccacatcagagaatatgaacaaatatgcaaatatttggctatataaataaaggcattgtgtgtt 24284881  T
Q  447 agtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaatt 519  Q
    | |||||| ||||||||| || | ||| | ||  ||||||| |  ||| |||||||||| |||||||||||||    
T  24284882 aatatttcttgcaccaatagtcagtggatgttactatagctggtattagctctactatttagtatctgtaatt 24284954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 438 - 518
Target Start/End: Complemental strand, 20261024 - 20260944
Alignment:
Q  438 ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaat 518  Q
    ||||||||||||||||| |||| |||| | |||||  ||||| |||| |||||||||||||||||||||||||| ||||||    
T  20261024 ttgtgtattagtatttcttgcatcaatagctaatgaattttgctataactagcgttacctctactattcagtatatgtaat 20260944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 348 - 487
Target Start/End: Original strand, 24272707 - 24272846
Alignment:
Q  348 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtatt 446  Q
    ||||||||||||||||||||||||||||||||  || ||||||| | | || ||||||||||||||||| ||  | ||||| ||||| |  |||||| ||    
T  24272707 ttgaaatatgtcttgaattagtgttggaaaaa-atctcacatcgtagagtatgaagaaatatgcaaagacttgacaatatatataaaggccttgtgtgtt 24272805  T
Q  447 agtatttcatgcaccaatggttaatgggttttgttatagct 487  Q
    |||||||| ||||||||| |||| || |||||  |||||||    
T  24272806 agtatttcttgcaccaatagttagtgagttttactatagct 24272846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 423 - 507
Target Start/End: Complemental strand, 22826727 - 22826642
Alignment:
Q  423 catataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattca 507  Q
    ||||||||||||||  || ||| |||||||||| ||||||||| |||| ||| ||||| |||||||||| |||| |||||||||||    
T  22826727 catataaataaaagccttatgtgttagtatttcttgcaccaatagttagtggattttgctatagctagcattacttctactattca 22826642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 348 - 518
Target Start/End: Original strand, 14721668 - 14721838
Alignment:
Q  348 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtatt 446  Q
    |||| ||||| | ||||||| |||||| |||||||||||||||||| ||||  ||||||||||||||||||| ||| ||||||||||||  |||| |||     
T  14721668 ttgacatatgccatgaattaatgttgggaaaatgtcccacatcggagaatagaaagaaatatgcaaagatttggcc-tataaataaaagccttgtttata 14721766  T
Q  447 agtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattcagtatctgtaat 518  Q
    |||||||| |||| |||| ||||||||||||||||||| ||    |||||| |||||||| |||||||||||    
T  14721767 agtatttcttgcagcaatagttaatgggttttgttatatctgatattacctatactattcggtatctgtaat 14721838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 379 - 507
Target Start/End: Complemental strand, 13558114 - 13557985
Alignment:
Q  379 atgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttt 477  Q
    |||||||||||||||||||| ||||||||||||||||  || | ||||||||||||||  |||||| |||||||||||||||||||| |||| ||| |||    
T  13558114 atgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaagcattgtgtgttagtatttcatgcaccaatagttagtggattt 13558015  T
Q  478 tgttatagctagcgttacctctactattca 507  Q
    || ||| |||||| |||| |||||||||||    
T  13558014 tgctattgctagcattacttctactattca 13557985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 389 - 537
Target Start/End: Complemental strand, 16910225 - 16910077
Alignment:
Q  389 tcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagct 487  Q
    |||||||||| |||| |||||||||||| || ||  ||||||||||||| |||||| |||||||||  ||| ||||| |||  || |||||| |||||||    
T  16910225 tcggataatatgaaggaatatgcaaagacttggcattataaataaaagtattgtgtgttagtatttgttgcgccaatagtttgtgtgttttgctatagct 16910126  T
Q  488 agcgttacctctactattcagtatctgtaattatcgattatagtgaattc 537  Q
    ||||| || | |||||||||||||||||||||||||||||||||||||||    
T  16910125 agcgt-acatttactattcagtatctgtaattatcgattatagtgaattc 16910077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 379 - 520
Target Start/End: Complemental strand, 2921981 - 2921839
Alignment:
Q  379 atgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttt 477  Q
    ||||| |||||||||||||| |||||||||||||| || || |  |||||||||||||| || ||| |||||||||| ||||||||| |||| |||||||    
T  2921981 atgtctcacatcggataatatgaagaaatatgcaatgacttggtaatataaataaaagtcttatgtgttagtatttcttgcaccaatagttagtgggttt 2921882  T
Q  478 tgttatagctagcgttacctctactattcagtatctgtaatta 520  Q
    || |||||||||| |||| |||| ||||||  || ||||||||    
T  2921881 tgctatagctagcattacgtctaatattcaaaatttgtaatta 2921839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 378 - 522
Target Start/End: Complemental strand, 27340743 - 27340600
Alignment:
Q  378 aatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagtttgtgtattagtatttcatgcaccaatggttaatgggttt 477  Q
    ||||||||||||||||||||| ||||||||||||||||  || | |||||||||||||   ||||| ||||||| || || |||||| |||| |||||||    
T  27340743 aatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaa-actgtgtgttagtatatcttgtaccaatagttagtgggttt 27340645  T
Q  478 tgttatagctagcgttacctctactattcagtatctgtaattatc 522  Q
    || |||| ||||| |||| |||||||||||  || ||||||||||    
T  27340644 tgctataactagcattacttctactattcaaaatttgtaattatc 27340600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 378 - 522
Target Start/End: Complemental strand, 27401483 - 27401340
Alignment:
Q  378 aatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagtttgtgtattagtatttcatgcaccaatggttaatgggttt 477  Q
    ||||||||||||||||||||| ||||||||||||||||  || | |||||||||||||   ||||| ||||||| || || |||||| |||| |||||||    
T  27401483 aatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaa-actgtgtgttagtatatcttgtaccaatagttagtgggttt 27401385  T
Q  478 tgttatagctagcgttacctctactattcagtatctgtaattatc 522  Q
    || |||| ||||| |||| |||||||||||  || ||||||||||    
T  27401384 tgctataactagcattacttctactattcaaaatttgtaattatc 27401340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 403 - 527
Target Start/End: Complemental strand, 13556119 - 13555994
Alignment:
Q  403 gaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctac 501  Q
    |||||||||||||  || | ||||||||||||||  |||||| |||||||||| ||||||||| |||| ||||||||| |||||||||| |||| |||||    
T  13556119 gaaatatgcaaaggcttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaatagttactgggttttgctatagctagcattacttctac 13556020  T
Q  502 tattcagtatctgtaattatcgatta 527  Q
    ||||||  || |||||||||| ||||    
T  13556019 tattcaaaatttgtaattatcaatta 13555994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 376 - 518
Target Start/End: Original strand, 11678827 - 11678966
Alignment:
Q  376 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg 474  Q
    ||||||||||||||||||||||| ||||||||||||||||  || | ||| ||||||||| | |||||| ||||||||||   ||||||    || |||     
T  11678827 aaaatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatgtaaataaaactcttgtgtgttagtatttctaacaccaa----tagtgga 11678922  T
Q  475 ttttgttatagctagcgttacctctactattcagtatctgtaat 518  Q
    ||||| ||||| |||| |||||||||||||||||||| ||||||    
T  11678923 ttttgctatagttagcattacctctactattcagtatttgtaat 11678966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 382 - 507
Target Start/End: Complemental strand, 2923295 - 2923168
Alignment:
Q  382 tcccacatcggataatacgaagaaatatgc-aaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttg 479  Q
    ||||||||||||||||| |||||||||||| ||||  || | ||||||||||||||| |||||| |||||| ||| ||||| ||| |||| ||||| |||    
T  2923295 tcccacatcggataatatgaagaaatatgcaaaaggcttggtcatataaataaaagtcttgtgtgttagtacttcttgcactaatagttagtgggtcttg 2923196  T
Q  480 ttatagctagcgttacctctactattca 507  Q
    |||||||||   |||| |||||||||||    
T  2923195 ttatagctaatattacttctactattca 2923168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 506
Target Start/End: Original strand, 11677133 - 11677240
Alignment:
Q  400 gaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctc 498  Q
    ||||||||||||||||  ||   ||||||||||||| | |||||| ||||||||||   ||||||| ||||  |||||||  |||||||||| |||||||    
T  11677133 gaagaaatatgcaaaggattgatcatataaataaaactcttgtgtgttagtatttctaacaccaatagttagcgggttttcctatagctagcattacctc 11677232  T
Q  499 tactattc 506  Q
    ||||||||    
T  11677233 tactattc 11677240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 484
Target Start/End: Complemental strand, 22880128 - 22880002
Alignment:
Q  359 cttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtattagtatttcatg 457  Q
    ||||||||||||||||||||| ||| |||| | || ||||  |||||||||  ||| | || | |||||||||||| | ||||||| ||| |||||| ||    
T  22880128 cttgaattagtgttggaaaaaagtcacacaacagagaatagaaagaaatatataaatacttggtcatataaataaaggttttgtgtgttaatatttcttg 22880029  T
Q  458 caccaatggttaatgggttttgttata 484  Q
    |||||||  ||| ||||||||| ||||    
T  22880028 caccaataattagtgggttttgctata 22880002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 484
Target Start/End: Complemental strand, 22898243 - 22898117
Alignment:
Q  359 cttgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtattagtatttcatg 457  Q
    ||||||||||||||||||||| ||| |||| | || ||||  |||||||||  ||| | || | |||||||||||| | ||| ||| ||| |||||| ||    
T  22898243 cttgaattagtgttggaaaaaagtcacacaacagagaatagaaagaaatatataaatacttggtcatataaataaaggttttttgtgttaatatttcttg 22898144  T
Q  458 caccaatggttaatgggttttgttata 484  Q
    |||||||  ||| ||||||||| ||||    
T  22898143 caccaataattagtgggttttgctata 22898117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 376 - 511
Target Start/End: Original strand, 19670657 - 19670793
Alignment:
Q  376 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg 474  Q
    |||||||| |||||  ||||||| ||||||||||||||||  || | ||||||||||||||  |||||| |||||||| | || |||||| |||| ||||    
T  19670657 aaaatgtctcacataagataatatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattacttgtaccaatagttagtggg 19670756  T
Q  475 ttttgttatagctagcgttacctctactattcagtat 511  Q
    ||||| |||||||||||||||||||||||||||||||    
T  19670757 ttttgctatagctagcgttacctctactattcagtat 19670793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 376 - 504
Target Start/End: Complemental strand, 32795672 - 32795543
Alignment:
Q  376 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatggg 474  Q
    ||||||||||||||||||||||| ||||||||||||||||| || | ||||| ||||||||| ||| || | |||||| | || |||||| |||| ||||    
T  32795672 aaaatgtcccacatcggataatatgaagaaatatgcaaagacttagtcatattaataaaagtcttgcgtgtcagtattacttgtaccaatagttagtggg 32795573  T
Q  475 ttttgttatagctagcgttacctctactat 504  Q
    ||||| |||| ||| |||||||||||||||    
T  32795572 ttttgctataactaacgttacctctactat 32795543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 489
Target Start/End: Original strand, 26896586 - 26896681
Alignment:
Q  395 aatacgaagaaatatgcaaagattttgccatataaataaa-agtttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctag 489  Q
    |||| ||||||||||||||||| || |||||||||||||| |  |||||| |||||||||| ||||  ||| ||||||| |||||| |||||||||    
T  26896586 aataggaagaaatatgcaaagacttggccatataaataaagacattgtgtgttagtatttcttgcattaatagttaatgtgttttgctatagctag 26896681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 452
Target Start/End: Complemental strand, 32796436 - 32796359
Alignment:
Q  376 aaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaag-tttgtgtattagtatt 452  Q
    ||||||||||| ||||||||||| ||||||||||||||||  || | ||||||||||||||  |||||| ||||||||    
T  32796436 aaaatgtcccagatcggataatatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtatt 32796359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 361 - 485
Target Start/End: Original strand, 33897182 - 33897307
Alignment:
Q  361 tgaattagtgttggaaaaatgtcccacatcggataatacgaagaaatatgcaaagattttgccatataaataaaagt-ttgtgtattagtatttcatgca 459  Q
    |||||||||||||| ||||||||| | |||  |||||| ||||||||||| ||||||||  | |||||||||||||| |||||| |||||||||  | ||    
T  33897182 tgaattagtgttgggaaaatgtccaatatcatataataggaagaaatatgtaaagatttgacaatataaataaaagtcttgtgtgttagtattttttaca 33897281  T
Q  460 ccaatggttaatgggttttgttatag 485  Q
    |||||  ||| | |||||||||||||    
T  33897282 ccaataattagtaggttttgttatag 33897307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 507
Target Start/End: Original strand, 42001905 - 42001987
Alignment:
Q  426 ataaataaaagt-ttgtgtattagtatttcatgcaccaatggttaatgggttttgttatagctagcgttacctctactattca 507  Q
    |||||||||||| |||||| |||||| | | ||||||||| |||| | ||||||| ||||| |||| |||| |||||||||||    
T  42001905 ataaataaaagtcttgtgtgttagtaatacttgcaccaatagttagtaggttttgctataggtagcattacttctactattca 42001987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 405
Target Start/End: Complemental strand, 260530 - 260473
Alignment:
Q  348 ttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcggataatacgaagaa 405  Q
    ||||||||||| ||||||||||||||| ||||||||| |||| || ||||||||||||    
T  260530 ttgaaatatgttttgaattagtgttgggaaaatgtcctacatagggtaatacgaagaa 260473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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