View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2581_low_3 (Length: 531)
Name: NF2581_low_3
Description: NF2581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2581_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 47080995 - 47080474
Alignment:
| Q |
1 |
aattttcaatgctcccaacaacaggttcataaatccagatgctgatctgtaaaagcctgtaatgtaatcagttcaattaaacatggttagttaaatgtag |
100 |
Q |
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| T |
47080995 |
aattttcaatgctcccaacaacaagttcataaatccagatgctgatctgtaaaagcctgtaatgtaatgagttcaattaaacatggttagttaaatgtag |
47080896 |
T |
|
| Q |
101 |
taattaataaagaaaggctgatatggtactactcaatttatacaaaagaggtaaataaaagagtagtggaaaaaagttagaatcatgggttgtgttgttg |
200 |
Q |
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| T |
47080895 |
taattaataaagaaagggtgatatggtactactcaatttacaaaagagtagtggaaaaaag----gtaaaaaaaagttagaatcatgggttgtgttgttt |
47080800 |
T |
|
| Q |
201 |
ctctgaagctacagctacaatagcataatttaaggaagcattaaagattgaaatagaccaattgtgatagggaatgaaggtatcaataatgagtacaatt |
300 |
Q |
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| T |
47080799 |
ctctgaagttacagctacaatagcataatttaaggaagcattaaagattgaaatagaccaattgtgatagggaatgaatgtatcaataatgagtacaatt |
47080700 |
T |
|
| Q |
301 |
cccaataataccctttctaacatgtactgtaagtatacattaattgaaggttgagtctgtgacacaacaggggcactccggacacattctgtgtgctccc |
400 |
Q |
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| T |
47080699 |
cccaataataccctttctaacatgtactgtaagtatacattaattgaaggttgagtctgtgacacaacaggggcactccggacacattctgtgtgctccc |
47080600 |
T |
|
| Q |
401 |
tcaggtcctgccggtgaatcctaacaaacatagttttccaaatgcctgctccactctctcatttattgtttctgatctttcaatcttttctgtttcattc |
500 |
Q |
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| T |
47080599 |
tcaggtcctgccggtgaatcctaacaaacatagttttccaaatgcctgctccactctctcatttattgtttctgatctttcaatcttttctgtttcattc |
47080500 |
T |
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| Q |
501 |
aaattttactagtaattcatctcact |
526 |
Q |
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| T |
47080499 |
aaattttactagtaattcatttcact |
47080474 |
T |
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Back To:
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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 3761804 - 3761845
Alignment:
| Q |
23 |
aggttcataaatccagatgctgatctgtaaaagcctgtaatg |
64 |
Q |
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| T |
3761804 |
aggttcataaattcagatgctgatatgtaaaagcatgtaatg |
3761845 |
T |
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