View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2582_high_1 (Length: 833)
Name: NF2582_high_1
Description: NF2582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2582_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 763; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 763; E-Value: 0
Query Start/End: Original strand, 1 - 827
Target Start/End: Original strand, 2016338 - 2017162
Alignment:
| Q |
1 |
ctatcttttttgtcattttcatattagtgattgcttctcactgagtttatatcaatgtctatatatcattgcctggcagttatttttataatttttagtt |
100 |
Q |
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| T |
2016338 |
ctatcttttttgtcattttcatattagtgattgcttctgactgagtttatatcaatgtctatatatcattgcctggcagttatttttataatttttagtt |
2016437 |
T |
|
| Q |
101 |
ttatgcacgaaaattagagaggaattgcttctgaatgtatcactgtttgctgagcttactttgttgatcattttgttattcaattaaccatgtgtcatgt |
200 |
Q |
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| T |
2016438 |
ttatgcacgaaaattagagaggaattgcttctgaatgtatcactgtt-gctgagcttactttgttgatcattttgttattcaattaaccatgtggcatgt |
2016536 |
T |
|
| Q |
201 |
gcggttttttgttattctgcaagtgaaatcattttgtatgcaaataccttttaattaattaatcactagtttgagtttactattgtactccctatggacc |
300 |
Q |
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| T |
2016537 |
gcggttttttgttattctgcaagtgaaatcattttgtatgcaaataccttttaattaattaatcactaatttgagtttactattgtactccctctggact |
2016636 |
T |
|
| Q |
301 |
tttttagaagtgacaaatgagtcaataaaagttgatgtaattggttcttatatagaccaaatacatcaattttattgatctattcgtctcttataaaaat |
400 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2016637 |
tttttataagtgacaaatgagtcgataaaagttgatgtaattggttcttatatagaccaaatacatcaattttattgatctattcgtctcttataaaaat |
2016736 |
T |
|
| Q |
401 |
gaccggaggaggtattgtctgcattcttcattccttgtctgcgctttgtagtcttggtcatgttgtggcaattgagaaagtaagcatcattcaacacatc |
500 |
Q |
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| T |
2016737 |
gactggaggaggtattgtctgcattcttcattccttgtctgcgctttgtagtcttggtcatgttgtggcaattgagaaagtaagcatcattcaacacatc |
2016836 |
T |
|
| Q |
501 |
tttggttcaatgcatgcaatgcaactaagtcggattttgaattctaatttgctacatttcggatatgttaatgacttggtgtaaggtttaaggcttcgcc |
600 |
Q |
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| T |
2016837 |
tttggttcaatgcatacaatgcaactaagtcggattttgaattctaatttgctacatttcggatatgttaatgacttggtgtaaggtttaaggcttcgcc |
2016936 |
T |
|
| Q |
601 |
atgttgtttgcattctatttcaaatatctcatttgttggtgcaaattaactgcaatgttaacttgtctgtcttctactcacattgataaattcctcagag |
700 |
Q |
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| T |
2016937 |
atgttgtttgcattctgtttcaaatatctcatttgttggtgcaaattaactgcaatgttaacttgtctgtcttctactcacattgataaattcctcagag |
2017036 |
T |
|
| Q |
701 |
ccaaatttttacacagaatggttatatgccaatattgataaacttacaacatcattaacagcaaaagaataagctggattgatagatgatgacgataatt |
800 |
Q |
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| T |
2017037 |
ccaaatttttacacagaatggttatataccaatattgataaacttacaacatcattaacagcaaaagaataagctggattgatagatgatgacgataa-t |
2017135 |
T |
|
| Q |
801 |
ttgttttgtagatgtaattttcttgga |
827 |
Q |
| |
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||||||||||||||||||||| ||||| |
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| T |
2017136 |
ttgttttgtagatgtaattttgttgga |
2017162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 412 - 521
Target Start/End: Original strand, 2015061 - 2015174
Alignment:
| Q |
412 |
gtattgtctgcattctt-cattccttgtctgcgctttgtagtcttggtcat---gttgtggcaattgagaaagtaagcatcattcaacacatctttggtt |
507 |
Q |
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|||||||||||||| || ||| |||||||| | ||| |||||||||||| | ||| ||||||| ||||||||||| |||||||| | ||||||||| |
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| T |
2015061 |
gtattgtctgcattttttcataccttgtctacacttagtagtcttggtcctcgtgttttggcaatcgagaaagtaagaatcattcagggcttctttggtt |
2015160 |
T |
|
| Q |
508 |
caatgcatgcaatg |
521 |
Q |
| |
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||||||||| |||| |
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| T |
2015161 |
caatgcatgtaatg |
2015174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 286 - 409
Target Start/End: Complemental strand, 30443858 - 30443733
Alignment:
| Q |
286 |
tactccctatggacctttttagaagtgacaaatgagtcaataaaagttgatgtaattggttc-ttatatagaccaaatacatcaa-ttttattgatctat |
383 |
Q |
| |
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|||||||| || |||||||| ||| ||||||| ||||| |||||||||||| ||||||| | ||||||||||||||||| || |||| |||| | || |
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| T |
30443858 |
tactccctccggtcctttttacaagagacaaattggtcaactaaagttgatgtatttggttcataatatagaccaaatacattaacttttgttgacccat |
30443759 |
T |
|
| Q |
384 |
tcgtctcttataaaaatgaccggagg |
409 |
Q |
| |
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| T |
30443758 |
ttgtttcttataaaaaagacgggagg |
30443733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 286 - 347
Target Start/End: Complemental strand, 48051033 - 48050972
Alignment:
| Q |
286 |
tactccctatggacctttttagaagtgacaaatgagtcaataaaagttgatgtaattggttc |
347 |
Q |
| |
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|||||||||||| |||||||| ||| ||||||| ||||| |||||||||||| ||||||| |
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| T |
48051033 |
tactccctatggtcctttttataagagacaaattggtcaactaaagttgatgtatttggttc |
48050972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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