View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2582_high_3 (Length: 547)

Name: NF2582_high_3
Description: NF2582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2582_high_3
NF2582_high_3
[»] chr4 (4 HSPs)
chr4 (273-530)||(52262300-52262556)
chr4 (204-501)||(52250584-52250885)
chr4 (119-217)||(52262179-52262277)
chr4 (16-76)||(52262113-52262173)
[»] chr1 (2 HSPs)
chr1 (360-509)||(3698843-3698992)
chr1 (360-509)||(3702531-3702680)


Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 273 - 530
Target Start/End: Original strand, 52262300 - 52262556
Alignment:
Q  273 caatattatccctagcctgaacagcagcaacagatctcgcaccattctcagccaccatttcatcatcaaacaattcaaaattccatccaggatccatctt 372  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  52262300 caatattatccctagcttgaacagcagcaacagatctcgcaccattctcagccaccatttcatcatcaaacaattcaaaattccatccag-atccatctt 52262398  T
Q  373 ctcatttctcatctcacaaatattatgcaaaacacaacaagcacctaaaatcttaggcaaatcctcaattttcacctctgtcctcttctgcaaacaggac 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52262399 ctcatttctcatctcacaaatattatgcaaaacacaacaagcacctaaaatcttaggcaaatcctcaattttcacctctgtcctcttttgcaaacaggac 52262498  T
Q  473 cacctccctttcagccttgcaaatgcatctttagcaatcctctgaatatcctcaacct 530  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52262499 cacctccctttcagccttgcaaatgcatctttagcaatcctctgaatatcctcaacct 52262556  T

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Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 204 - 501
Target Start/End: Original strand, 52250584 - 52250885
Alignment:
Q  204 tgacataacagaaaacataaa----cctatagaaaagtattgccagcacggccacgatgcaacaagtcatgagcaatattatccctagcctgaacagcag 299  Q
    |||||||||||||||||||||    | |||| ||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  52250584 tgacataacagaaaacataaaaaaacttataaaaaagtattgccaacacgaccacgatgcaacaaatcatgagcaatattatccctagcttgagcagcag 52250683  T
Q  300 caacagatctcgcaccattctcagccaccatttcatcatcaaacaattcaaaattccatccaggatccatcttctcatttctcatctcacaaatattatg 399  Q
    |||||||| || ||||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||    
T  52250684 caacagatttcacaccattctcagcaaccatttcatcatcaaaaagttcaaaattccatgcaggatccatcttctcattcctcatttcacaaatattatg 52250783  T
Q  400 caaaacacaacaagcacctaaaatcttaggcaaatcctcaattttcacctctgtcctcttctgcaaacaggaccacctccctttcagccttgcaaatgca 499  Q
    |||||||||||||||||| | ||    |||||| |||||||| ||||||||| |||||||||||||||| |||||||| ||||||| | ||||||| |||    
T  52250784 caaaacacaacaagcaccaagaacaccaggcaactcctcaatcttcacctctatcctcttctgcaaacaagaccaccttcctttcacctttgcaaacgca 52250883  T
Q  500 tc 501  Q
    ||    
T  52250884 tc 52250885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 119 - 217
Target Start/End: Original strand, 52262179 - 52262277
Alignment:
Q  119 taacaatagatccacacaatatagtcttgttcttctctaatatgaatgactagtaataagtcatagctaaaatattgaaatcatttgacataacagaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52262179 taacaatagatccacacaatatagtcttgttcttctctaatatgaatgactagtaataagtcatagctaaaatattgaaatcatttgacataatagaaa 52262277  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 52262113 - 52262173
Alignment:
Q  16 atggaaagtcgtgagttcaaatccgcgcccttgtaaactgatgtctccatcaaataaacta 76  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  52262113 atggaaagtcgtgagttcaaatccgcgcccttgtaaacagatgtctccatcaaataaacta 52262173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 360 - 509
Target Start/End: Complemental strand, 3698992 - 3698843
Alignment:
Q  360 caggatccatcttctcatttctcatctcacaaatattatgcaaaacacaacaagcacctaaaatcttaggcaaatcctcaattttcacctctgtcctctt 459  Q
    |||||||||| ||||||  | ||||||||||||| ||||||||||||||||||||||| |  |    ||||||||| |  |  ||||| || ||||| ||    
T  3698992 caggatccattttctcacctttcatctcacaaatgttatgcaaaacacaacaagcaccaagtacaacaggcaaatcttgtagcttcacttcagtcctttt 3698893  T
Q  460 ctgcaaacaggaccacctccctttcagccttgcaaatgcatctttagcaa 509  Q
    ||||||||| |||||||| |||||||  || |||||||||||||||||||    
T  3698892 ctgcaaacaagaccacctacctttcaatctagcaaatgcatctttagcaa 3698843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 509
Target Start/End: Complemental strand, 3702680 - 3702531
Alignment:
Q  360 caggatccatcttctcatttctcatctcacaaatattatgcaaaacacaacaagcacctaaaatc-ttaggcaaatcctcaattttcacctctgtcctct 458  Q
    |||||||||| ||||||  | ||||||||||||| ||||||||||||||||||||| | ||  ||   ||||||||| | ||  ||||| || ||||| |    
T  3702680 caggatccattttctcacctttcatctcacaaatgttatgcaaaacacaacaagca-caaagttcaacaggcaaatcttgaagcttcacttcagtccttt 3702582  T
Q  459 tctgcaaacaggaccacctccctttcagccttgcaaatgcatctttagcaa 509  Q
    |||||||||| |||||||| |||||||  || |||||||||||||||||||    
T  3702581 tctgcaaacaagaccacctacctttcaatctagcaaatgcatctttagcaa 3702531  T

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