View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2582_high_6 (Length: 372)

Name: NF2582_high_6
Description: NF2582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2582_high_6
NF2582_high_6
[»] chr7 (10 HSPs)
chr7 (14-345)||(29269607-29269931)
chr7 (14-185)||(29279160-29279331)
chr7 (12-241)||(29287541-29287766)
chr7 (75-185)||(29275327-29275437)
chr7 (31-262)||(29282062-29282293)
chr7 (12-141)||(28612912-28613041)
chr7 (12-149)||(28621251-28621388)
chr7 (18-149)||(28614653-28614783)
chr7 (108-172)||(29286976-29287040)
chr7 (314-345)||(29279043-29279074)
[»] chr1 (3 HSPs)
chr1 (36-171)||(4235404-4235539)
chr1 (36-171)||(49144997-49145132)
chr1 (50-173)||(49149542-49149665)
[»] chr5 (1 HSPs)
chr5 (42-135)||(35625842-35625935)


Alignment Details
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 14 - 345
Target Start/End: Complemental strand, 29269931 - 29269607
Alignment:
Q  14 cataggtggtacattaatcctaaattgatgatttttatggttaagctttgcaactgaaagccaagtcttgcacaccacacgaaacctaacatgatctatg 113  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| || ||| ||||||||||||||| |||||||||||||||||||    
T  29269931 cataggtggtacatcaatcctaaattgatgatttttatggttaagctttgcaattgataggcaactcttgcacaccacaccaaacctaacatgatctatg 29269832  T
Q  114 tgttcttccaacttatcaagaaccaaactaagaggataggcttctaaatttgcccaatctaccttcctcatttctaggtgagagtgtttaatcgataaaa 213  Q
    |||||||||||||  |||||||||||||||||||| |||   |||||||||| |||||||||||| |||||| | | || | ||| |||||| ||| ||     
T  29269831 tgttcttccaactcgtcaagaaccaaactaagagggtagcaatctaaatttgaccaatctacctttctcattgccaagtaaaagtctttaattgatgaag 29269732  T
Q  214 tagaactgaccggtagagtaattgaaggcagtgtttggggcaagatactttgctcacgatgtaggaaactacaactacaaactctccatcataaatgggt 313  Q
    ||||||||||||||  |||||||||| ||||| ||||||| ||||||||       | | ||| |||| | ||| || |||||||||  ||||||| | |    
T  29269731 tagaactgaccggtgaagtaattgaaagcagtctttggggaaagatact-------caacgtacgaaagtccaattataaactctccgccataaatagtt 29269639  T
Q  314 ttacctgcataatgtatagacagaaactccat 345  Q
    |||||||||||||||||| |||||||| ||||    
T  29269638 ttacctgcataatgtataaacagaaacaccat 29269607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 29279331 - 29279160
Alignment:
Q  14 cataggtggtacattaatcctaaattgatgatttttatggttaagctttgcaactgaaagccaagtcttgcacaccacacgaaacctaacatgatctatg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| |||||||||| |||||||||||||||||||    
T  29279331 cataggtggtacattaatcctaaattgatgatttttatggttaagcgttgcaactgaaaaccaattcttacacaccacaccaaacctaacatgatctatg 29279232  T
Q  114 tgttcttccaacttatcaagaaccaaactaagaggataggcttctaaatttgcccaatctaccttcctcatt 185  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||| ||||||||||||    
T  29279231 tgttcttccaacttatcaagaacaaaactaagaggatatgcttctaaattttcccaatcaaccttcctcatt 29279160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 29287766 - 29287541
Alignment:
Q  12 agcataggtggtacattaatcctaaattgatgatttttatggttaagctttgcaactgaaagccaagtcttgcacaccacacgaaacctaacatgatcta 111  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| |||| |||||||||| |||||||||||  |||     
T  29287766 agcataggtagtacattaatcctaaattgatgatttttatggttaagcttagcaattgatagccaattcttacacaccacaccaaacctaacatagtctg 29287667  T
Q  112 tgtgttcttccaacttatcaagaaccaaactaagaggataggcttctaaatttgcccaatctaccttcctcatttctaggtgagagtgtttaatcgataa 211  Q
    | ||| |||||||||| |||||||||||||||||||||    || ||||||||||||||||||| ||| ||||| |||    ||||  || ||| |||||    
T  29287666 tttgtacttccaacttttcaagaaccaaactaagaggaagtcctcctaaatttgcccaatctacattcgtcattgcta----agagccttgaattgataa 29287571  T
Q  212 aatagaactgaccggtagagtaattgaagg 241  Q
    | |||||||||| ||| |||||||||||||    
T  29287570 agtagaactgactggtggagtaattgaagg 29287541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 75 - 185
Target Start/End: Complemental strand, 29275437 - 29275327
Alignment:
Q  75 caagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagaggataggcttctaaatttgcccaatcta 174  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||| |    
T  29275437 caagtcttgcacactacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagaggagaggattctaaattttcccaatcaa 29275338  T
Q  175 ccttcctcatt 185  Q
    |||||||||||    
T  29275337 ccttcctcatt 29275327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 31 - 262
Target Start/End: Complemental strand, 29282293 - 29282062
Alignment:
Q  31 tcctaaattgatgatttttatggttaagctttgcaactgaaagccaagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatc 130  Q
    ||||||||||||||||||||||||||||||| ||| |||| |||||| |||| ||||| ||||  ||||||||||  ||| | ||| |||||||||| ||    
T  29282293 tcctaaattgatgatttttatggttaagcttagcagctgatagccaattcttacacacaacaccgaacctaacatagtctgtttgtacttccaacttttc 29282194  T
Q  131 aagaaccaaactaagaggataggcttctaaatttgcccaatctaccttcctcatttctaggtgagagtgtttaatcgataaaatagaactgaccggtaga 230  Q
    |||||||||||||||||||    | | ||||||||||||||| |||||||||||| ||| || ||||  || | | |||||| |||||||||| ||| ||    
T  29282193 aagaaccaaactaagaggaagttcatttaaatttgcccaatcaaccttcctcattgctaagtaagagccttgacttgataaagtagaactgactggtgga 29282094  T
Q  231 gtaattgaaggcagtgtttggggcaagatact 262  Q
    |||| |||||||||| |||| || ||||||||    
T  29282093 gtaactgaaggcagtctttgaggtaagatact 29282062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 12 - 141
Target Start/End: Original strand, 28612912 - 28613041
Alignment:
Q  12 agcataggtggtacattaatcctaaattgatgatttttatggttaagctttgcaactgaaagccaagtcttgcacaccacacgaaacctaacatgatcta 111  Q
    ||||| ||||||| |||| |||||||||||||  ||| ||||||||||||||||||||| ||||||||||||||||| |||  |||||||||||||||||    
T  28612912 agcatgggtggtatattactcctaaattgatggctttgatggttaagctttgcaactgatagccaagtcttgcacacgacagcaaacctaacatgatcta 28613011  T
Q  112 tgtgttcttccaacttatcaagaaccaaac 141  Q
    |||||||||||||||| |||||||||||||    
T  28613012 tgtgttcttccaacttgtcaagaaccaaac 28613041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 28621388 - 28621251
Alignment:
Q  12 agcataggtggtacattaatcctaaattgatgatttttatggttaagctttgcaactgaaagccaagtcttgcacaccacacgaaacctaacatgatcta 111  Q
    ||||| ||||||| |||||| |||||||||||||||| |||||| | ||||||||||||| ||||| | |||||||| |||| ||||||||||||||| |    
T  28621388 agcatgggtggtatattaatgctaaattgatgattttgatggttcaactttgcaactgaacgccaatttttgcacacgacaccaaacctaacatgatcga 28621289  T
Q  112 tgtgttcttccaacttatcaagaaccaaactaagagga 149  Q
    ||||||||||||| || |||||||||||||||||||||    
T  28621288 tgtgttcttccaatttgtcaagaaccaaactaagagga 28621251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 28614783 - 28614653
Alignment:
Q  18 ggtggtacattaatcctaaattgatgatttttatggttaagctttgcaactgaaagccaagtcttgcacaccacacgaaacctaacatgatctatgtgtt 117  Q
    ||||||| | ||||| |||||||||| |||| |||||||||||||||||||||  |||||||||||||||| ||||  ||||||||||||||||||||||    
T  28614783 ggtggtatagtaatcataaattgatggttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacactgaacctaacatgatctatgtgtt 28614684  T
Q  118 cttccaacttatcaagaaccaaactaagagga 149  Q
    |||| |||||  ||||||||||| ||||||||    
T  28614683 cttctaactt-gcaagaaccaaattaagagga 28614653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 29287040 - 29286976
Alignment:
Q  108 tctatgtgttcttccaacttatcaagaaccaaactaagaggataggcttctaaatttgcccaatc 172  Q
    |||||||||||||||||||| ||||| |||||||| ||||| |||  ||||||||||||||||||    
T  29287040 tctatgtgttcttccaacttgtcaagcaccaaactgagagggtagcattctaaatttgcccaatc 29286976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 345
Target Start/End: Complemental strand, 29279074 - 29279043
Alignment:
Q  314 ttacctgcataatgtatagacagaaactccat 345  Q
    ||||||||||||||||||||||||||||||||    
T  29279074 ttacctgcataatgtatagacagaaactccat 29279043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 36 - 171
Target Start/End: Complemental strand, 4235539 - 4235404
Alignment:
Q  36 aattgatgatttttatggttaagctttgcaactgaaagccaagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaa 135  Q
    ||||||||||||| |||||||| |||||||| |||  ||||| ||||||||||  ||| ||||| |||||||| |||||||||||| ||||| ||||| |    
T  4235539 aattgatgattttgatggttaaactttgcaattgatcgccaactcttgcacacagcaccaaaccaaacatgatatatgtgttcttctaacttgtcaagta 4235440  T
Q  136 ccaaactaagaggataggcttctaaatttgcccaat 171  Q
     |||||||||||||   |||||||||||||||||||    
T  4235439 tcaaactaagaggaagtgcttctaaatttgcccaat 4235404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 36 - 171
Target Start/End: Complemental strand, 49145132 - 49144997
Alignment:
Q  36 aattgatgatttttatggttaagctttgcaactgaaagccaagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaa 135  Q
    ||||||||||||| |||| ||| |||||||| |||  ||||||||||||||||  ||| ||||  ||||| ||||||||||||||| ||||| |||||||    
T  49145132 aattgatgattttgatggctaaactttgcaattgatcgccaagtcttgcacacagcaccaaacgaaacataatctatgtgttcttctaacttgtcaagaa 49145033  T
Q  136 ccaaactaagaggataggcttctaaatttgcccaat 171  Q
     |||| |||||| |  ||||||||||||||||||||    
T  49145032 tcaaattaagagcaagggcttctaaatttgcccaat 49144997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 50 - 173
Target Start/End: Complemental strand, 49149665 - 49149542
Alignment:
Q  50 atggttaagctttgcaactgaaagccaagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagagga 149  Q
    ||||||||||||||||| |||  ||||| ||||||||||  ||| ||||| ||||||||||||||||||||| ||| | ||||||||||||| |||||||    
T  49149665 atggttaagctttgcaattgatcgccaactcttgcacacagcaccaaaccaaacatgatctatgtgttcttctaacatgtcaagaaccaaaccaagagga 49149566  T
Q  150 taggcttctaaatttgcccaatct 173  Q
       ||| |||||||| ||||||||    
T  49149565 attgctcctaaatttacccaatct 49149542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 135
Target Start/End: Original strand, 35625842 - 35625935
Alignment:
Q  42 tgatttttatggttaagctttgcaactgaaagccaagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaa 135  Q
    ||||||| |||||||| |||||||| |||  ||||  ||||||||||  |||  |||| ||||||||||||  ||||||| ||||| |||||||    
T  35625842 tgattttgatggttaaactttgcaattgatcgccagttcttgcacacggcaccgaaccaaacatgatctattcgttcttctaacttgtcaagaa 35625935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University