View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2582_high_7 (Length: 322)

Name: NF2582_high_7
Description: NF2582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2582_high_7
NF2582_high_7
[»] chr3 (1 HSPs)
chr3 (10-304)||(24429239-24429535)


Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 304
Target Start/End: Complemental strand, 24429535 - 24429239
Alignment:
Q  10 atgaattatctgcatattgggtttgcaataatggggtgctaccatctgcatcacactctcttccactcatgatgatgaagatttgattttgattatctaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24429535 atgaattatctgcatattgggtttgcaataatggggtgctaccatctgcatcacactctcttccactcatgatgatgaagatttgattttgattatctaa 24429436  T
Q  110 ttatcccaatcgcaaaaatttgttattgatttgaaaatagattttggtggatcggat-ttttgattgatctttcctttcagagagaatttggc-ttggtt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  24429435 ttatcccaatcgcaaaaatttgttattgatttgaaaatagattttggtggatcggattttttgattgatctttcctttcagagagaatttggctttggtt 24429336  T
Q  208 tgtgattgtgtgagatgagttttgttaaaatacaaatgcacaacacaatggcatgtggaaagtataagtcgcttaccccagcatacaaatgatatat 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24429335 tgtgattgtgtgagatgagttttgttaaaatacaaatgcacaacacaatggcatgtggaaagtataagtcgcttacccgagcatacaaatgatatat 24429239  T

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